Publications

CeZAP affiliated faculty publish hundreds of peer-reviewed scientific articles annually including many published in Nature, Science, Cell, Nature Communications and Proceedings of the National Academy of Sciences, USA.

2022-23 Publications

Antibiotic perturbation of gut bacteria does not significantly alter host responses to ocular disease in a songbird species  Weitzman CL, Belden LK, May M, Langager MM, Dalloul RA, Hawley DM. PeerJ  DOI: 10.7717/peerj.13559

Hepatitis E virus infects brain microvascular endothelial cells, crosses the blood-brain barrier, and invades the central nervious system Tian D, Li W, Heffron CL, Wang B, Mahsoub HM, Sooryanarain H, Hassebroek AM, Clark-Deener S, LeRoith T, Meng XJ Proc Natl Acad Sci U S A  DOI: 10.1073/pnas.2201862119

Discovery of In Vivo Active Sphingosine-1-phosphate Transporter (Spns2) Inhibitors. Fritzemeier R, Foster D, Peralta A, Payette M, Kharel Y, Huang T, Lynch KR, Santos WL. J Med Chem DOI: 10.1021/acs.jmedchem.1c02171

Ligand-free copper-catalyzed borylative defluorination: access to gem-difluoroallyl boronic acid derivatives. Gates AM, Jos S, Santos WL. Org Biomol Chem  DOI: 10.1039/d1ob01533h

Long-read metagenomic sequencing reveals shifts in associations of antibiotic resistance genes with mobile genetic elements from sewage to activated sludge. Dai D, Brown C, Bürgmann H, Larsson DGJ, Nambi I, Zhang T, Flach CF, Pruden A, Vikesland PJ. Microbiome  DOI: 10.1186/s40168-021-01216-5

Occurrence of opportunistic pathogens in private wells after major flooding events: A four state molecular survey. Mapili K, Rhoads WJ, Coughter M, Pieper KJ, Edwards MA, Pruden A. Sci Total Environ  DOI: 10.1016/j.scitotenv.2022.153901

Establishment of a gnotobiotic pig model of Clostridioides difficile infection and disease  Nyblade C, Parreno V, Zhou P, Hensley C, Oakes V, Mahsoub HM, Kiley K, Frazier M, Frazier A, Zhang Y, Feng H, Yuan L. Gut Pathog  DOI: 10.1186/s13099-022-00496-y

Successful restoration of archived ovine formalin fixed paraffin-embedded tissue DNA and single nucleotide polymorphism analysis. Kravitz A, Tyler R, Manohar BM, Ronald BSM, Collins MT, Sriranganathan N. Vet Res Commun  DOI: 10.1007/s11259-022-09937-0

A Reduced F₄₂₀-Dependent Nitrite Reductase in an Anaerobic Methanotrophic Archaeon Heryakusuma C, Susanti D, Yu H, Li Z, Purwantini E, Hettich RL, Orphan VJ, Mukhopadhyay B. J Bacteriol DOI: 10.1128/jb.00078-22

Simulations of cross-amyloid aggregation of amyloid-β and islet amyloid polypeptide fragments Kawecki GE, King KM, Cramer NA, Bevan DR, Brown AM. Biophys J DOI: 10.1016/j.bpj.2022.05.007

EGR1 Upregulation during Encephalitic Viral Infections Contributes to Inflammation and Cell Death Lehman C, Smith A, Kelly J, Jacobs JL, Dinman JD, Kehn-Hall K. Viruses DOI: 10.3390/v14061210

Genome size distributions in bacteria and archaea are strongly linked to evolutionary history at broad phylogenetic scales Martinez-Gutierrez CA, Aylward FO. PLoS Genet DOI: 10.1371/journal.pgen.1010220

Sarcoptic mange: An emerging panzootic in wildlife Escobar LE, Carver S, Cross PC, Rossi L, Almberg ES, Yabsley MJ, Niedringhaus KD, Van Wick P, Dominguez-Villegas E, Gakuya F, Xie Y, Angelone S, Gortázar C, Astorga F. Transbound Emerg Dis DOI: 10.1111/tbed.14082

Relating Eulerian and Lagrangian spatial models for vector-host disease dynamics through a fundamental matrix  Bernal E, Saucedo O, Tien J. J Math Biol  DOI: 10.1007/s00285-022-01761-z

Integrating Environmental Dimensions of "One Health" to Combat Antimicrobial Resistance: Essential Research Needs. Jin L, Pruden A, Boehm AB, Alvarez PJJ, Raskin L, Kohn T, Li X. Environ Sci Technol DOI: 10.1021/acs.est.2c01651

Investigating plant disease outbreaks with long-read metagenomics: sensitive detection and highly resolved phylogenetic reconstruction applied to Xylella fastidiosa. Johnson MA, Liu H, Bush E, Sharma P, Yang S, Mazloom R, Heath LS, Nita M, Li S, Vinatzer BA .Microb Genom DOI: 10.1099/mgen.0.000822

Stress Hormones Epinephrine and Corticosterone Selectively Reactivate HSV-1 and HSV-2 in Sympathetic and Sensory Neurons Goswami P, Ives AM, Abbott ARN, Bertke AS.  Viruses DOI: 10.3390/v14051115

Behavioral and postural analyses establish sleep-like states for mosquitoes that can impact host landing and blood feeding. Ajayi OM, Marlman JM, Gleitz LA, Smith ES, Piller BD, Krupa JA, Vinauger C, Benoit JB. J Exp Bio DOI: 10.1242/jeb.244032

Species-Specificity in Thermopreference and CO₂-Gated Heat-Seeking in Culex Mosquitoes Reinhold JM, Chandrasegaran K, Oker H, Crespo JE, Vinauger C, Lahondère C.  Insects DOI: 10.3390/insects13010092

Thermal biology of invasive Aedes mosquitoes in the context of climate change. Lahondère C, Bonizzoni M. Curr Opin Insect Sci DOI: 10.1016/j.cois.2022.100920

Particle-mediated Histotripsy for the Targeted Treatment of Catheter-based Medical Device Biofilms Childers C, Edsall C, Mehochko I, Mustafa W, Durmaz Y, Klibanov A, Rao J, Vlaisavljevich E. BME Frontiers

Infectious disease and congnition in wild populations Townsend A, Sewall K, Leonard A, Hawley D.  Trends in Ecology & Evolution DOI: 10.1016/j.tree.2022.06.005

Infection strategy and biogeography distinguish cosmopolitan groups of marine jumbo bacteriophages Weinheimer A, Aylward F. ISME J. DOI: 10.1038/s41396-022-01214-x

Morphological and molecular characterization of Quinqueserialis (Digenea: Notocotylidae) species diversity in North America-CORRIGENDUM.  Gagnon DK, Kasl EL, Preisser WC, Belden LK, Detwiler JT. Parasitology DOI: 10.1017/S0031182021001219

The SKBR3 cell-membrane proteome reveals telltales of aberrant cancer cell proliferation and targets for precision medicine applications Karcini A, Lazar L Sci Rep DOI: 10.1038/s41598-022-14418-0

Mining transcriptome data: Utilization of environmentally regulated promoters for protein expression and purification in Clostridium perfringens. Soncini SR, Camper GJ, Melville SB. J Microbiol Methods DOI: 10.1016/j.mimet.2022.106519

The Shigella Spp. Type III Effector Protein OspB Is a Cysteine Protease. Wood TE, Westervelt KA, Yoon JM, Eshleman HD, Levy R, Burnes H, Slade DJ, Lesser CF, Goldberg MB mBio. DOI: 10.1128/mbio.01270-22

Partial masculinization of Aedes aegypti females by conditional expression of Nix. Kojin BB, Jakes E, Biedler JK, Tu Z, Adelman ZN. PLoS Negl Trop Dis. DOI: 10.1371/journal.pntd.0010598

The AalNix3&4 isoform is required and sufficient to convert Aedes albopictus females into males. Zhao Y, Jin B, Liu P, Xiao X, Cai L, Xie Z, Kong L, Liu T, Yang W, Wu Y, Gu J, Tu Z, James AA, Chen XG. PLoS Genet  DOI: 10.1371/journal.pgen.1010280

Dominant remodelling of cattle rumen microbiome by Schedonorus arundinaceus (tall fescue) KY-31 carrying a fungal endophyte. Khairunisa BH, Susanti D, Loganathan U, Teutsch CD, Campbell BT, Fiske D, Wilkinson CA, Aylward FO, Mukhopadhyay B. Access Microbiol. DOI: 10.1099/acmi.0.000322

Cholesterol stiffening of lipid membranes and drug interactions: Insights from neutron spin echo and deuterium NMR spectroscopy. Gupta S, Doole FT, Kumarage T, Doktorova M, Khelashvili G, Ashkar R, Brown MF. Cholesterol Chapter 29 DOI: 10.1016/B978-0-323-85857-1.00037-7

A Time-of-Flight EXPanded Angle Neutron Spin Echo Spectrometer at the Second Target Station of the Spallation Neutron Source, Review of Scientific Instruments C. Do C., Ashkar R, et al. Expanse DOI: 10.1063/5.0089349

Bottled and Well Water Quality in a Small Central Appalachian Community: Household-Level Analysis of Enteric Pathogens, Inorganic Chemicals, and Health Outcomes in Rural Southwest Virginia Cohen, A., Rasheduzzaman, M., Darling, A., Krometis, LA, Edwards, M., Brown, T., Ahmed, T., Wettstone, E., Pholwat, S., Taniuchi, M., & Rogawski McQuade, E.T. Int J. Environ. Res Public Health DOI: 10.3390/ijerph19148610

Development of a Controlled Laboratory-scale Inoculation System to Study Vibrio parahaemolyticus-oyster Interactions Hines I, Smith S, Kuhn DD, Stevens AM. FEMS Microbiol Lett DOI: 10.1093/femsle/fnac055

Critical review of antibiotic resistance genes in the atmosphere Kormos D, Lin K, Pruden A, Marr LC Environ Sci Process Impacts DOI: 10.1039/d2em00091a

Antimicrobial Resistance Monitoring of Water Environments: A Framework for Standardized Methos and Quality Control Liguori K, Keenum I, Davis B, Calarco J, Milligan E, Harwood V, Pruden A. Environ Sci Technol DOI: 10.1021/acs.est.1c08918

Surface-enhanced Raman spectorscopy enabled evaluation of bacterial inactivation Wang W, Rahman A, Huang Q, Vikesland P. Water Res DOI: 10.1016/j.watres.2022.118668

Reconstruction landscapes of ungulate parturition and predation using vegetation phenology Van de Vuurst P, Moore S, Isaac E, Chenauz-Ibrahim Y, Wolf T, Escobar LE Curr Zool DOI: 10.1093/cz/zoab058

Impact of Electronic Polarization on Preformed, β-Strand Rich Homogenous and Heterogenous Amyloid Oligomers. King KM, Sharp AK, Davidson DS, Brown AM, Lemkul JA. J Comput Biophys Chem DOI: 10.1142/s2737416521420059

Human Milk Oligosaccharides Impact Cellular and Inflammatory Gene Expression and Immune Response Rosa F, Sharma AK, Gurung M, Casero D, Matazel K, Bode L, Simecka C, Elolimy AA, Tripp P, Randolph C, Hand TW, Williams KD, LeRoith T, Yeruva L. Front Immunol. DOI: 10.3389/fimmu.2022.907529

Muscarinic Acetylcholine Receptor Activation Synergizes the Knockdown and Toxicity of GABA-Gated Chloride Channel Insecticides Xie N, Gross A. Pest Manag Sci DOI: 10.1002/ps.7079

Comparison of Bulk- vs. Layer-by-layer-cured Stimuli-responsive PNIPAM-Alginate Hydrogel Dynamic Viscoelastic Property Response via Embedded Sensors Liu Y, Bethel K, Singh M, J. Zhang J, Ashkar R, Davis E, Johnson B. ACS Applied Polymer Materials DOI: 10.1021/acsapm.2c00634

Complete Genome Sequence of Providencia stuartii CMC-4104, Isolated from a Human Splenic Abscess, Containing Multiple Copies of NDM-1 and PER-1 Carbapenem Resistance Genes Rao J, Stornelli NK, Everson NA, McDaniel LF, Gomez De La Espriella M, Faulhaber JR, Todd SM, Lahmers KK, Jensen RV. Microbiol Resour Announce DOI: 10.1128/mra.00514-22

Wearable adjunct ozone and antibiotic therapy system for treatment of Gram-negative dermal bacterial infection.Roth A, Maruthamuthu MK, Nejati S, Krishnakumar A, Selvamani V, Sedaghat S, Nguyen J, Seleem MN, Rahimi R. Sci Rep DOI: 10.1038/s41598-022-17495-3

Selective targeting of biting females to control mosquito-borne infectious diseases. Kojin BB, Compton A, Adelman ZN, Tu Z. Trends Parasitol DOI: 10.1016/j.pt.2022.05.012

Visualization of the Linear and Spatial Organization of Chromosomes in Mosquitoes.Liang J, Bondarenko SM, Sharakhov IV, Sharakhova MV. Cold Spring Harb Protoc. DOI: 10.1101/pdb.top107732

Mechanical limitation of bacterial motility mediated by growing cell chains. McMahon SG, Melville SB, Chen J. Biophys J. DOI: 10.1016/j.bpj.2022.05.012

Optimizing Pooled Testing for Estimating the Prevalence of Multiple Diseases.Warasi MS, Hungerford LL, Lahmers K. J Agric Biol Environ DOI: 10.1007/s13253-022-00511-4

Flagellotropic Bacteriophages: Opportunities and Challenges for Antimicrobial Applications Esteves N, Scharf BE. Int J Mol Sci DOI: 103390/ijms23137084

Vaccine Effectiveness during Outbreak of COVID-19 Alpha (B.1.1.7) Variant in Men's Correctional Facility, United States Silverman, R. Ceci A, Cohen A, Helmick M, Short E, Bordwine P, Friedlander M, Finkielstein C. Emerg Infect Dis DOI: 10.3201/eid2807.220091

Mining transcriptome data: Utilization of environmentally regulated promoters for protein expression and purification in Clostridium perfringens. Soncini SR, Camper GJ, Melville SB. J Microbiol Methods DOI: 10.1016/j.mimet.2022.106519.

Sphingosine 1-phosphate signaling in perivascular cells enhances inflammation and fibrosis in the kidney.
Tanaka S, Zheng S, Kharel Y, Fritzemeier RG, Huang T, Foster D, Poudel N, Goggins E, Yamaoka Y, Rudnicka KP, Lipsey JE, Radel HV, Ryuh SM, Inoue T, Yao J, Rosin DL, Schwab SR, Santos WL, Lynch KR, Okusa MD. Sci Transl Med DOI: 10.1126/scitranslmed.abj2681

Two mutations in the ORF1 of genotype 1 hepatitis E virus enhance virus replication and may associate with fulminant hepatic failure. Wang B, Tian D, Sooryanarain H, Mahsoub HM, Heffron CL, Hassebroek AM, Meng XJ. Proc Natl Acad Sci U S A. DOI: 10.1073/pnas.2207503119

Declines in prevalence alter the optimal level of sexual investment for the malaria parasite Plasmodium falciparum Early AM, Camponovo F, Pelleau S, Cerqueira GC, Lazrek Y, Volney B, Carrasquilla M, de Thoisy B, Buckee CO, Childs LM, Musset L, Neafsey DE. Proc Natl Acad Sci U S A DOI: 10.1073/pnas.2122165119.

Prolonged shedding of Zika virus in human semen is associated with male reproductive tract inflammation.Vogt MB, McDonald EM, Delorey M, Mead PS, Hook SA, Hinckley AF, Werre SR, Brault AC, Duggal NK. J Infect Dis. DOI: 10.1093/infdis/jiac329

Prevalence and Associated Risk Factors of African Animal Trypanosomiasis in Cattle in Lambwe, Kenya Okello I, Mafie E, Eastwood G, Nzalawahe J, Mboera LEG, Onyoyo S Journal of Parasitology Research DOI:10.1155/2022/5984376

Visualization of the Linear and Spatial Organization of Chromosomes in Mosquitoes Liang J, Bondarenko SM, Sharakhov IV, Sharakhova MV Cold Spring Harb Protoc. DOI: 10.1101/pdb.top107732

Visualization of Polytene Chromatin in Mosquito Cell Nuclei Using Three-Dimensional Fluorescence In Situ Hybridization Bondarenko SM, Liang J, Sharakhova MV, Sharakhov IV. Cold Spring Harb Protoc. DOI: 10.1101/pdb.prot107873

Obtaining Polytene, Meiotic, and Mitotic Chromosomes from Mosquitoes for Cytogenetic Analysis Liang J, Bondarenko SM, Sharakhov IV, Sharakhova MV. Cold Spring Harb Protoc. DOI: 10.1101/pdb.prot107872

The Human Right to Water: A 20-Year Comparative Analysis of Arsenic in Rural and Carceral Drinking Water Systems in California. Rempel, J., Ray, I., Hessl, E., Vazin, J., Zhou, Z., Kim, S., Zhang, X., Ding, C., He, Z., Pellow, D., Cohen, A. Environmental Health Perspectives, DOI: 10.1289/EHP10758

Modulation of SOCS3 Levels via STAT3 and Estrogen-ERαp66 Signaling during Hepatitis E Virus Replication in Hepatocellular Carcinoma Cells Sooryanarain H, Heffron CL, Mahsoub HM, Hassebroek AM, Wang B, Tian D, Ahmed SA, and X.J. Meng.  Journal of Virology  DOI:: 10.1128/jvi.01008-22.

A conserved viral amphipathic helix governs the replication site-specific membrane association. Santhanantham, P., Zhao, W., He, G., Fenech, E., Murray, A., Yang, C., Diaz, A., Schuldiner, M., Wang, X.  PLoS Pathogens  DOI: 10.1371/journal.ppat.1010752

Probiotic as adjuvant significantly improves protection of the Lanzhou trivalent rotavirus vaccine against heterologous challenge in a gnotobiotic pig model of human rotavirus infection and disease Parreno V, Bai M, Liu F, Jing J, Olney E, Li G, Wen K, Yang Y, Castellucci TB, Kocher JF, Zhou X, Yuan L Vaccines  DOI: 10.3390/vaccines10091529

Maternal antibody repertoire restriction modulates the development of lupus-like disease in BXSB offspring. Zhu J, Naughton S, Bowman N, LeRioth T, Luo X, Leeth C. Int Immunol DOI: 10.1093/intimm/dxac049

Catechol-containing compounds are a broad class of protein aggregation inhibitors: Redox state is a key determinant of the inhibitory activities. Velander P, Wu L, Hildreth SB, Vogelaar NJ, Mukhopadhyay B, Helm RF, Zhang S, Xu B. Pharmacol Res. DOI: 10.1016/j.phrs.2022.106409

Nutritional Evaluation of Black Soldier Fly Frass as an Ingredient in Florida Pompano (Trachinotus carolinus L.) Diets. Banavar A, Amirkolaei SK, Duscher L, Khairunisa BH, Mukhopadhyay B, Schwarz M, Urick S, Ovissipour R.  Animals (Basel). DOI: 10.3390/ani12182407

Fusobacterium nucleatum induces proliferation and migration in pancreatic cancer cells through host autocrine and paracrine signaling. Udayasuryan B, Ahmad RN, Nguyen TTD, Umaña A, Monét Roberts L, Sobol P, Jones SD, Munson JM, Slade DJ, Verbridge SS.Sci Signal  DOI: 10.1126/scisignal.abn4948

Reconstruction of GRACE terrestrial water storage anomalies using Multi-Layer Perceptrons for South Indian River basins. Kumar KS, AnandRaj P, Sreelatha K, Sridhar V. Sci Total Environ DOI: 10.1016/j.scitotenv.2022.159289

Photoswitchable Microgel for Dynamic Macrophage Modulation . Kim Y, Thangam R, Yoo J, Heo J, Park JY, Kang N, Lee S, Yoon J, Mun KR, Kang M, Min S, Kim SY, Son S, Kim J, Hong H, Bae G, Kim K, Lee S, Yang L, Lee JY, Kim J, Park S, Kim DH, Lee KB, Jang WY, Kim BH, Paulmurugan R, Cho SW, Song HC, Kang SJ, Sun W, Zhu Y, Lee J, Kim HJ, Jang HS, Kim JS, Khademhosseini A, Kim Y, Kim S, Kang H.Adv Mater.  DOI: 10.1002/adma.202205498

Effects of lattice dilution on the nonequilibrium phase transition in the stochastic susceptible-infectious-recovered model Mukhamadiarov RI, Täuber UC. Phys Rev E. DOI: 10.1103/PhysRevE.106.034132

Muscarinic acetylcholine receptor activation synergizes the knockdown and toxicity of GABA-gated chloride channel insecticides. Xie N, Gross AD. Pest Manag Sci DOI: 10.1002/ps.7079

Thermorubin biosynthesis initiated by a salicylate synthase suggests an unusual conversion of phenols to pyrones McCord, J. P, Kohanov, Z. A., Lowell, A.N.,  ACS Chem Biol. DOI: 10.1021/acschembio.2c00606

Marker-assisted mapping enables forward genetic analysis in Aedes aegypti, an arboviral vector with vast recombination deserts Chen C, Compton A, Nikolouli K, Wang A, Aryan A, Sharma A, Qi Y, Dellinger C, Hempel M, Potters M, Augustinos A, Severson DW, Bourtzis K, Tu Z. Genetics. DOI: 10.1093/genetics/iyac140

Identification of Candidate Ice Nucleation Activity (INA) Genes in Fusarium avenaceum by Combining Phenotypic Characterization with Comparative Genomics and Transcriptomics. Yang S, Rojas M, Coleman JJ, Vinatzer BA.  J Fungi (Basel). DOI: 10.3390/jof8090958

Designing synergistic crystallization inhibitors: Bile salt derivatives of cellulose with enhanced hydrophilicity. Novo DC, Gao C, Qi Q, Mosquera-Giraldo LI, Spiering GA, Moore RB, Taylor LS, Edgar KJ. Carbohydr Polym. DOI: 10.1016/j.carbpol.2022.119680

Complete Genome Sequence of Providencia stuartii CMC-4104, Isolated from a Human Slenic Abscess, Containing Multiple Copies of MDM-1 and PER-1 Carbapenem Resistance Genes.  Rao J, Stornelli NC, Everson N, McDaniel L, Gomez De La Espriella M, Faulhaber J, Todd SM, Lahmers K, Jensen R. Microbiol Resour Announce  DOI: 10.1128/mra.00514-22

Infectious disease and cognition in wild populations Townsend AK, Sewall KB, Leonard AS, Hawley DM. Trends Ecol Evol  DOI: 10.1016/j.tree.2022.06.005

Comparative Study of Bacterial SPOR Domains Identifies Functionally Important Differences in Glycan Binding Affinity Yahashiri A, Kaus GM, Popham DL, Houtman JCD, Weiss DS. J Bacteriol. DOI: 10.1128/jb.00252-22

FliL and its paralog MotF have distinct roles in the stator activity of the Sinorhizobium meliloti flagellar motor. Sobe RC, Gilbert C, Vo L, Alexandre G, Scharf BE.  Mol Microbiol. DOI: 10.1111/mmi.14964

Endogenous giant viruses contribute to intraspecies genomic variability in the model green alga Clamydomonas reinhardtii Moniruzzaman M, Erazo-Garcia MP, Aylward FO. Virus Evolution DOI: 10.1093/ve/veac102

Sphingosine Kinase 2 Inhibitors: Rigid Aliphatic Tail Derivatives Deliver Potent and Selective Analogues. Pashikanti S, Foster DJ, Kharel Y, Brown AM, Bevan DR, Lynch KR, Santos WL. ACS Bio Med Chem Au DOI: 10.1021/acsbiomedchemau.2c00017

Muscarinic acetylcholine receptor activation synergizes the knockdown and toxicity of GABA-gated chloride channel insecticides Xie N, Gross AD. Pest Manag Sci DOI: 10.1002/ps.7079

Host movement, transmission hot spots, and vector-borne disease dynamics on spatial networks. Saucedo O, Tien JH. Infectious Disease Modeling DOI: 10.48550/arXiv.2204.07678

Enhanced Fusobacterium nucleatum Genetics Using Host DNA Methyltransferases To Bypass Restriction-Modification Systems. Umaña A, Nguyen TTD, Sanders BE, Williams KJ, Wozniak B, Slade DJ. J Bacteriol DOI: 10.1128/jb.00279-22

Kinetic and Structural Characterization of a Flavin-Dependent Putrescine N-Hydroxlayse from Acinetobacter baumanni Lyon N, Bogner A, Tanner J, Sobrado P. Biochemistry DOI: 10.1021/acs.biochem.2c00493

First isolation of Carnobacterium maltaromaticum from farmed rainbow trout Oncorhynchus mykiss in Virginia. Smith, S.A., S.J. Newman, C.E. Harrison, Loch TP J Aquat Anim Health DOI: 10.1002/aah.10176

Development of a controlled laboratory-scale inoculation system to study Vibrio parahaemolyticus-oyster interactions. Hines, I., Smith, S.A., Kuhn, DD, Stevens, A. FEMS Microbiol Lett. DOI: 10.1093/femsle/fnac055

Phage Predation Promotes Filamentous Bacterium Piscinibacter Colonization and Improves Structural and Hydraulic Stability of Microbial Aggregates.Yu Z, Chen J, Tan Y, Shen Y, Zhu L, Yu P. Environ Sci Technol. DOI: 10.1021/acs.est.2c04745

Demonstrating a Comprehensive Wastewater-Based Surveillance Approach That Differentiates Globally Sourced Resistomes. Prieto Riquelme MV, Garner E, Gupta S, Metch J, Zhu N, Blair MF, Arango-Argoty G, Maile-Moskowitz A, Li AD, Flach CF, Aga DS, Nambi IM, Larsson DGJ, Bürgmann H, Zhang T, Pruden A, Vikesland PJ. Environ Sci Technol. DOI: 10.1021/acs.est.1c08673

Land cover and community water system characteristics as predictors of Safe Drinking Water Act violations in Central Appalachia, USA7. Smith E, Krometis LH, Czuba JA, Kolivras K. Sci Total Environ.
DOI: 10.1016/j.scitotenv.2022.159726

Antimicrobial Resistance in the Environment: Informing Policy and Practice to Prevent the Spread. Pruden A. Environ Sci Technol DOI: 10.1021/acs.est.2c07503

Comparative genomics of Lactobacillaceae from the gut of honey bees, Apis mellifera, from the Eastern US. Bradford EL, Wax N, Bueren EK, Walke JB, Fell R, Belden LK, Haak DC. G3 (Bethesda). DOI: 10.1093/g3journal/jkac286

Phosphine-catalyzed regio- and stereo-selective hydroboration of ynamides to (Z)-β-borylenamides. Jos S, Tan C, Thilmany P, Saadane A, Slebodnick C, Evano G, Santos WL. Chem Commun (Camb) DOI: 10.1039/d2cc04543e

Feasibility of polyclonal avian immunoglobulins (IgY) as prophylaxis against human norovirus infection Artman C, Idegwu N, Brumfield KD, Lai K, Hauta S, Falzarano D, Parreño V, Yuan L, Geyer JD, Goepp JG Viruses DOI: 10.3390/v14112371

North American House Sparrows Are Competent for Usutu Virus Transmission. Kuchinsky SC, Marano J, Hawks SA, Loessberg E, Honaker CF, Siegel PB, Lahondère C, LeRoith T, Weger-Lucarelli J, Duggal NK. mSphere. DOI: 10.1128/msphere.00295-22

Leveraging a Fluorescent Fatty Acid Probe to Discover Cell-Permeable Inhibitors of Plasmodium falciparum Glycerolipid Biosynthesis Dapper C, Liu J, Klemba M. MIcrobiol Spectr. DOI: 10.1128/spectrum.02456-22

Steelhead trout (Oncorhynchus mykiss) fed probiotic during the earliest developmental stages have enhanced growth rates and intestinal microbiome bacterial diversity Hines IS, Santiago-Morales, KD, Ferguson CS, Clarington J, Thompson M, Rauschenbach M, Levine U, Drahos D, Aylward FO, Smith SA, Kuhn DD, Stevens AM. Front. Mar. Sci. DOI: 10.3389/fmars.2022.1021647

High virulence is associated with pathogen spreadability in a songbird-bacterial system Hawley DM, Thomason CA, Aberle MA, Brown R, Adelman JS. R Soc Open Sci DOI: 10.1098/rsos.220975

Successful restoration of archived ovine formalin fixed paraffinembedded tissue DNA and single nucleotide polymorphism analysis Kravitz A, Tyler R, Manohar BM, Ronald BSM, Collins MT, Sriranganthan N. Vet Res Commun DOI: 10.1007/s11259-022-09937-0

Canine melanoma: A review of diagnostics and comparative mechanisms of disease and immunotolerance in the era of the immunotherapies. Stevenson VB, Klahn S, LeRoith T, Huckle WR. Front Vet Sci. DOI: 10.3389/fvets.2022.1046636

Bacterial composition of a competitive exclusion product and its correlation with product efficacy at reducing Salmonella in poultry Lee MD, Pedroso AA, Maurer JJ. Front Physiol DOI: 10.3389/fphys.2022.1043383

Fast ViromeExplorer-Novel: Recovering Draft Genomes of Novel Viruses and Phages in Metagenomic Data Tithi SS, Aylward FO, Jensen RV, Zhang L. J Comput Biol DOI: 10.1089/cmb.2022.0397

Exploring the expanse between theoretical questions and experimental approaches in the modern study of evolvability Draghi JA, Ogbunugafor CB. J Exp Zool B Mol Dev Evol DOI: 10.1002/jez.b.23134

Examining the association between safe drinking water act violations and adverse birth outcomes in Virginia. Young HA, Kolivras KN, Krometis LH, Marcillo CE, Gohlke JM. Environ Res. DOI: 10.1016/j.envres.2022.114977

Connecting genomic islands across prokaryotic and phage genomes via protein families Aldaihani R, Heath LS. Sci Rep DOI: 10.1038/s41598-023-27584-6

Super-enhanced evaporation of droplets from porous coatings. Hosseini M, Rodriguez A, Ducker, WA. J Colloid Interface Sci DOI: 10.1016/j.jcis.2022.11.065

Neuromodulation and differential learning across mosquito species Wolff G, Lahondere C, Vinauger C, Rylance E, Riffel JA. Proc Biol Sci DOI: 10.1098/rspb.2022.2118

Immune response to arbovirus infection in obesity. Hameed M, Geerling E, Pinto AK, Miraj I, Weger-Lucarelli J.  Front Immunol. DOI: 10.3389/fimmu.2002.968582

Distribution of Theileria orientalis in Virginia Market Cattle, 2018-2020. Telionis A, Lahmers K, Todd M, Carbonello A, Broaddus CC, Bissett CJ, Hungerford LL. Pathogens DOI: 10.3390/pathogens11111353

Short-term consumption of the mycotoxin zearalenone by pubertal gilts causes persistent changes in the histoarchitecture of reproductive tissues. Soffa DR, Stewart JW, Pack ED, Arneson AG, De Vita R, Knight JW, Fausnacht DW, Rhoads RP, Clark SG, Schmale DG, Rhoads ML. J Anim Sci. DOI: 10.1093/jas/skac421

Highly porous gold supraparticles as surface-enhanced Raman spectroscopy (SERS) substrates for sensitive detection of environmental contaminants. Kang S, Wang W, Rahman A, Nam W, Zhou W, Vikesland PJ. RSC Adv DOI: 10.1039/d2ra06248h

Land cover and community water system characteristics as predictors of Safe Drinking Water Act violations in Central Appalachia, USA Smith E, Krometis LH, Czuba JA, Kolivras K. Sci Total Environ DOI: 10.1016/j.scitotenv.2022.159726

Characterizing Ion-Polymer Interactions in Aqueous Environment with Electric Fields. Vaissier Welborn V, Archer WR, Schulz MD.  J Chem Inf Model DOi: 10.1021/acs.jcim.2c01048

Dithiocarbamates effectively inhibit the α-carbonic anhydrase from Neisseria gonorrhoeae.  Giovannuzzi S, Abutaleb NS, Hewitt CS, Carta F, Nocentini A, Seleem MN, Flaherty DP, Supuran CT.  J Enzyme Inhib Med Chem DOI: 10.1080/14756366.2021.1988945

Visual threats reduce blood-feeding and trigger escape responses in Aedes aegypti mosquitoes Wynne NE, Chandrasegaran K, Fryzlewicz L, Vinauger C. Sci Rep DOI: 10.1038/s41598-022-25461-2

A new gnotobiotic pig model of P[6] human rotavirus infection and disease for preclinical evaluation of rotavirus vaccines. Nyblade C, Hensley C, Parreno V, Zhou P, Frazier M, Frazier A, Ramesh A, Lei S, Degiuseppe JI, Tan M, Yuan L. Viruses DOI: 10.3390/v14122803

Triazoles as pharmacophores to explore sidechain functionalization for expanded pleuromutilin derivatives Breiner, LM, Briganti, A., McCord, JP, Heifitz, M., Philbrook, S., Slebodnick, C., Brown, A M, Lowell, AN. Tetrahedron Chem DOI:10.1016/j.tchem.2022.100034

Bioprospecting the American Alligator Peptidome for antiviral peptides against Venezuelan equine encephalitis virus. Carfagno A, Lin SC, Chafran L, Akhrymuk I, Callahan V, Po M, Zhu Y, Altalhi A, Durkin DP, Russo P, Vliet KA, Webb-Robertson BJ, Kehn-Hall K, Bishop B. Proteomics DOI: 10.1002/pmic.200200237

Visual threats reduce blood-feeding and trigger escape responses in Aedes aegypti mosquitoes Wynne NE, Chandrasegaran K, Fryzlewicz L, Vinauger C. Sci Rep
DOI: 10.1038/s41598-022-25461-2

A new gnotobiotic pig model of P[6] human rotavirus infection and disease for preclinical evaluation of rotavirus vaccines. Nyblade C, Hensley C, Parreno V, Zhou P, Frazier M, Frazier A, Ramesh A, Lei S, Degiuseppe JI, Tan M, Yuan L. Viruses DOI: 10.3390/v14122803

Trypanosoma congolense resistant to Trypanocidal drugs Homidium and Diminazene and their molecular characterization in Lambwe, Kenya. Acta Parasitologica. Okello I, Mafie E, Nzalawahe J, Eastwood G, Mboera LEG, Hakizimana JN, Ogola K. Acta Parasitologica
DOI: 10.1007/s11686-022-00640-3

Alphavirus Particles Can Assemble with an Alternate Triangulation Number. Kaelber JT, Chmielewski D, Chiu W, Auguste AJ. Viruses DOI: 10.3390/v14122650

Triazoles as pharmacophores to explore sidechain functionalization for expanded pleuromutilin derivatives Breiner, LM, Briganti, A., McCord, JP, Heifitz, M., Philbrook, S., Slebodnick, C., Brown, A M, Lowell, AN. Tetrahedron Chem DOI:10.1016/j.tchem.2022.100034

Bioprospecting the American Alligator Peptidome for antiviral peptides against Venezuelan equine encephalitis virus. Carfagno A, Lin SC, Chafran L, Akhrymuk I, Callahan V, Po M, Zhu Y, Altalhi A, Durkin DP, Russo P, Vliet KA, Webb-Robertson BJ, Kehn-Hall K, Bishop B. Proteomics DOI: 10.1002/pmic.200200237

Leveraging a Fluorescent Fatty Acid Probe to Discover Cell-Permeable Inhibitors of Plasmodium falciparum Glycerolipid Biosynthesis Dapper C, Liu J, Klemba M. MIcrobiol Spectr. DOI: 10.1128/spectrum.02456-22

Steelhead trout (Oncorhynchus mykiss) fed probiotic during the earliest developmental stages have enhanced growth rates and intestinal microbiome bacterial diversity Hines IS, Santiago-Morales, KD, Ferguson CS, Clarington J, Thompson M, Rauschenbach M, Levine U, Drahos D, Aylward FO, Smith SA, Kuhn DD, Stevens AM. Front. Mar. Sci. DOI: 10.3389/fmars.2022.1021647

Comparative genomics of Lactobacillaceae from the gut of honey bees, Apis mellifera, from the Eastern US. Bradford EL, Wax N, Bueren EK, Walke JB, Fell R, Belden LK, Haak DC. G3 (Bethesda). DOI: 10.1093/g3journal/jkac286

Phosphine-catalyzed regio- and stereo-selective hydroboration of ynamides to (Z)-β-borylenamides. Jos S, Tan C, Thilmany P, Saadane A, Slebodnick C, Evano G, Santos WL. Chem Commun (Camb)
DOI: 10.1039/d2cc04543e

Host movement, transmission hot spots, and vector-borne disease dynamics on spatial networks. Saucedo O, Tien JH. Infectious Disease Modeling DOI: 10.48550/arXiv.2204.07678

Enhanced Fusobacterium nucleatum Genetics Using Host DNA Methyltransferases To Bypass Restriction-Modification Systems. Umaña A, Nguyen TTD, Sanders BE, Williams KJ, Wozniak B, Slade DJ. J Bacteriol DOI: 10.1128/jb.00279-22

Kinetic and Structural Characterization of a Flavin-Dependent Putrescine N-Hydroxlayse from Acinetobacter baumanni Lyon N, Bogner A, Tanner J, Sobrado P. Biochemistry DOI: 10.1021/acs.biochem.2c00493

First isolation of Carnobacterium maltaromaticum from farmed rainbow trout Oncorhynchus mykiss in Virginia. Smith, S.A., S.J. Newman, C.E. Harrison, Loch TP J Aquat Anim Health
DOI: 10.1002/aah.10176

Development of a controlled laboratory-scale inoculation system to study Vibrio parahaemolyticus-oyster interactions. Hines, I., Smith, S.A., Kuhn, DD, Stevens, A. FEMS Microbiol Lett. DOI: 10.1093/femsle/fnac055

Phage Predation Promotes Filamentous Bacterium Piscinibacter Colonization and Improves Structural and Hydraulic Stability of Microbial Aggregates.Yu Z, Chen J, Tan Y, Shen Y, Zhu L, Yu P. Environ Sci Technol. DOI: 10.1021/acs.est.2c04745

Demonstrating a Comprehensive Wastewater-Based Surveillance Approach That Differentiates Globally Sourced Resistomes. Prieto Riquelme MV, Garner E, Gupta S, Metch J, Zhu N, Blair MF, Arango-Argoty G, Maile-Moskowitz A, Li AD, Flach CF, Aga DS, Nambi IM, Larsson DGJ, Bürgmann H, Zhang T, Pruden A, Vikesland PJ. Environ Sci Technol. DOI: 10.1021/acs.est.1c08673

2021-22 Publications

Rujuan Dai*, Wang^G Z, Ahmed SA* “Epigenetic contribution and genomic imprinting DLK1-Dio3 miRNAs in systemic lupus erythematous” Gene May 1;12(5):680. DOI: 10.3390/genes12050680. PMID: 34062726, 2021 *Corresponding authors

Sooryanarain H, Ahmed SA , Meng XJ.“Progesterone-Mediated Enhancement of Hepatitis E Virus Replication in Human Liver Cells” mBio, 2021 Jun 29;12(3): Impact Factor - 6.784 e0143421.doi: 10.1128/mBio.01434-21. Epub 2021 Jun 22. PMID: 34154410,: PMC8262892, DOI: 10.1128/mBio.01434-21

Cabana-Puig^G X, Bond^G J, Wang^G Z, DaI R, Lu^P R, Lin^U A, Oakes^G V, Rizzo A, Swartwout^G B, Abdelhamid^G L, Mao^P J, Prakash^G M, Sangmeister C, Cheung N, Cowan^G C, Christopher M. Reilly, Sun s, Ahmed* SA, Luo* XM "Phenotypic drift in lupus-prone MRL/lpr mice: Potential roles of microRNAs and gut microbiota” ImmunoHorizons, 2022 Jan 17;6(1):36-46. DOI: 10.4049/immunohorizons.2100082 * Co-Corresponding authors.

R, Wang^G Z, Reilly C, Ahmed, SA*. “EGR2 Deletion Suppresses Anti-DsDNA Autoantibody and IL-17 Production in Autoimmune-prone B6/lpr Mice: A Differential Immune Regulatory Role of EGR2 in B6/lpr versus Normal B6 Mice”. Frontiers in Immunology. (Autoimmune and Autoimmune Disorders Section) 2022 (In Press) DOI: 10.3389/fimmu.2022.917866

Zhuang Wang^G , Bettina Heid, Ran Lu^P., Mohit Sachdeva., Michael R Edwards^P, Jingling Ren^G., Thomas Cecere., Deena Khan^P., Taschua Jeboda^U, David Kirsch., Rujuan Dai.*, Ansar Ahmed, S* “Deletion of microRNA-183-96-182 Cluster in Lymphocytes Suppresses Anti-DsDNA Autoantibody Production and IgG Deposition in the Kidneys in C57BL/6-Faslpr/lpr Mice” *Corresponding author. Frontiers in Genetics (In Press), 2022 DOI: 10.3389/fgene.2022.840060

Soumyabrata B., Uchil A., Kalsang T., Chakrabarty S., Ali MA, Srisungsitthisunti P., Mahato K. K., Surdo S., and Mazumder N. 2022. “The revolution of PDMS microfluidics in cellular biology." Critical Reviews in Biotechnology (2022): 1-19. DOI:10.1080/07388551.2022.2034733

Ali MA, Hu C., Zhang F., Jahan S., Yuan B., Saleh M.S., Gao S. J., and Panat R., 2022. N protein‐based ultrasensitive SARS‐CoV‐2 antibody detection in seconds via 3D nanoprinted, microarchitected array electrodes.” Journal of medical virology. DOI: 10.1002/jmv.27591

Ali MA, Hu C., Yttri E. A., Panat, R., 2022. Recent advances in 3D printing of biomedical sensing devices. Advanced Functional Materials, 32(9), p.2107671 DOI: 10.1002/adfm.202107671

Nguyen, V.Q., Eden, K.B., Morrison, H.A.^G, Sammons, M.B.^U, Knight, K., Sorrentino, S., Brock, R.M.^G, Grider, D.J., Allen, I.C.*, Sorrentino, D.* (2021). Noncanonical NF-κB signaling upregulation in inflammatory bowel disease patients is associated with loss of response to anti-TNF agents. Frontiers in Pharmacology. Jun 10; 12:655887. PMID: 34177575. *Co-Corresponding Author. IF: 4.225 DOI:10.3389/fphar.2021.655887

Callahan, V.^G, Hawks, S., Crawford, M.A., Lehman, C.W., Morrison, H.A.^G, Ivester, H.M.^G, Akhrymuk, I., Boghdeh, N., Flor, R.^G, Finkielstein, C.V., Allen, I.C., Weger-Lucarelli, J., Duggal, N., Hughes, M.A., Kehn-Hall, K. (2021). The pro-inflammatory chemokines CXCL9, CXCL10, and CXCL11 are upregulated following SARS-CoV-2 infection in an AKT-dependent manner. Viruses. Jun 3;13(6):1062. PMID: 34205098. IF: 5.048 DOI:10.3390/v13061062

Auguste, A.J., Langsjoen, R.M., Erasmus, J.H., Bergren, N.A., PorierD.L., Bolling, B.G., Luo,H., Guzman,H., Popov,V.L., Travassos da Rosa, A.P.A., Wang,T., Kang,L., Allen,I.C., Carrington,C.V.F., Tesh,R.B., Weaver.S.C. (2021). Isolation of a novel insect-specific Flavivirus with a unique vertebrate cell entry phenotype. Viruses. Jul 8;562:50-62. PMID: 34256244. IF: 5.048 DOI: 10.1016/j.virol.2021.07.004

Alinezhadbalalami, N., Graybill, P.M., Imran, K.M.^G, Verbridge, S.S., Allen, I.C., Davalos, R.V. (2021). Generation of Tumor-activated T cells Using Electroporation. Bioelectrochemistry. Jul 13; 142:107886. PMID: 34303065. IF: 5.27 DOI: 10.1016/j.bioelechem.2021.107886

Arnold, L.N., Hendricks-Wenger, A.^G, Coutermarsh-Ott, S.L., Gannon, J., Hay, A.N., Dervisis, N., Klahn, S., Allen, I.C., Tuohy, J., Vlaisavljevich, E. (2021). Histotripsy Ablation of Bone Tumors: Feasibility Study in Excised Canine Osteosarcoma Tumors. Ultrasound in Medicine and Biology. Dec;47(12):3435-3446. PMID: 34462159. IF: 2.98 DOI: 10.1016/j.ultrasmedbio.2021.08.004

Porier, D.L., Wilson, S.N., Auguste, D.I., Leber, A., Coutermash-Ott, S., Kang, L., Michalak, P., Allen, I.C., Tupik, J.^G, Caswell, C.C., Budnick, J.A., Weger-Lucarelli, J., Weaver, S.C., Auguste, A.J. (2021). Enemy of my enemy: a novel insect-specific flavivirus offers a promising platform for Flavivirus vaccines. Vaccines. Oct 7;9(10):1142. PMID: 34696250. IF: 4.422 DOI:10.3390/vaccines9101142

Hendricks-Wenger, A.^G, Saunier,S.,Simon,A., Grider,D., Luyimbazi,D., Allen,I.C.*, Vlaisavljevich,E.* (2021). Histotripsy for the Treatment of Cholangiocarcinoma in a Patient-Derived Xenograft Mouse Model. Ultrasound in Medicine and Biology. Feb;48(2):293-303. PMID: 34750030. IF: 2.514 *Co-Corresponding Authors. DOI: 10.1016/j.ultrasmedbio.2021.10.002

Beitel-White, N., Lorenzo, M.F., Zhao, Y., Aycock, K.N., Manuchehrabadi, N.M., Brocks, R.M.^G, Coutermarsh-Ott, S., Imran, K.M.^G, Allen,I.C., Davalos, R.V. (2021). Comparison of analysis methods for determination of dynamic tissue conductivity during microseconds-long pulsed electric fields. Biomedical Signal Processing and Control. Vol. 72, Part B, (In Press 11/10/21) IF: 3.88 DOI:10.1016/j.bspc.2021.103305

Aycock, K.N., Vadlamani, R.A., Jacobs, E.J., Khan, I.M.^G, Verbridge, S.S., Allen, I.C., Manuchehrabadi, N., Davalos, R.V. (2021). Experimental and numerical investigation of parameters affecting high-frequency irreversible electroporation for prostate cancer ablation. Journal of Biomedical Engineering. Jun 1;144(6):061003. PMID: 35044426. IF: 2.097 DOI: 0.1115/1.4053595

Fritsch, L., Ju, J., Basso, E.K.G., Soliman, E., Paul, P., Chen, J., Kowalski, E., Tuhy, T.C., Somaiya, R.D., Wang, X., Allen, I.C., Theus, M.H., Pickrell, A.M. (2022). cGAS-STING signaling pathway mediates brain trauma-induced Type I Interferon response. Frontiers in Molecular Neuroscience. Feb 25;15:852243. PMID: 35283725. IF: 5.639 DOI: 10.21203/rs.3.rs-855949/v1

Catanzaro, K.C.F., Lahmers, K., Allen, I.C., Inzana, T.J. (2022). Alginate microencapsulation of an attenuated O-antigen mutant of Francisella tularensis LVS as a model for a vaccine delivery vehicle. PLoS One. Mar 11;17(3):e0259807. PMID: 35275912. IF: 3.24 DOI: 10.1371/journal.pone.0259807

Ruger, L.N., Hendricks-Wenger, A.^G, Coutermarsh-Ott, S., Gannon, J., Hay, A., Dervisis, N., Klahn, S., Allen, I.C., Tuohy, J., Vlaisavljevich, E. Histotripsy Ablation of Bone Tumors: Feasibility Study in Excised Canine Osteosarcoma Tumors. Ultrasound in Medicine and Biology. (In Press 03/08/2022). IF: 2.998 DOI:10.1016/j.ultrasmedbio.2021.08.004

Morrison, H.A.^G, Liu, Y., Eden, K., Nagai-Singer, M.^G, Wade, P.*, Allen, I.C.* (2022). NLRX1 Deficiency Increases Susceptibility Towards Gut Microbiome Dysbiosis and Is Further Exacerbated by Adherence to a Gluten-free Diet. Frontiers in Immunology. (In Press). IF: 7.561 *Corresponding Authors Contributed Equally DOI: 10.3389/fimmu.2022.882521

Latifi, M., Hay, A., Carroll, J., Dervisis, N., Arnold, L., Coutermarsh-Ott, S., Kierski, K., Allen, I.C., Vlaisavljevich, E., Tuohy, J. (2021). Focused Ultrasound Tumor Ablation in Small Animal Oncology. Veterinary and Comparative Oncology. Sep;19(3):411-419. PMID: 34057278. IF: 2.32 DOI:10.1111/vco.12742

Hendricks-Wenger, A.^G, Arnold, L., Gannon, J., Simon, A., Signh, N., Sheppard, H., Nagai-Singer^G, M., Imran^G, K., Lee, K., Clark-Deener, S., Bryon, C., Edwards, M., Larson, M., Rossmeisl, J., Coutermarsh-Ott, S., Eden, K., Dervisis, N., Klahn, S., Tuohy, J., Allen, I.C.*, Vlaisavljevich, E*. (2021). Histotripsy Ablation in Preclinical Animal Models of Cancer and Spontaneous Tumors in Veterinary Patients: A Review. IEEE Ultrasonics, Ferroelectrics, and Frequency Control. Jan;69(1):5-26. PMID: 34478363. *Co-Corresponding Author. IF: 3.46 DOI:10.1109/TUFFC.2021.3110083.

Imran, K.M.^G, Nagai-Singer, M.A.^G, Brock, R.M.^G, Alinezhadbalalami, N., Davalos, R.V., Allen, I.C. (2022). Exploration of Novel Pathways Underlying Irreversible Electroporation Inducted Anti-Tumor Immunity in Pancreatic Cancer. Frontiers in Oncology. Mar 18;12:853779. PMID: 35372046. IF: 6.244 DOI: 10.3389/fonc.2022.853779

Trusiano, B.^P, Tupik, J.D.^G, Allen, I.C. (2022). Cold Sensor, Hot Topic: TRPM8 Plays a Role in Monocyte Function and Differentiation. Journal of Leukocyte Biology. (In Press). Invited Editorial. IF: 4.289 DOI:10.1002/JLB.3CE0222-099R

Kinnun, J. J.*, Scott, H. L.*, Ashkar, R.*, and Katsaras, J.* (2021). Biomembrane Structure and Material Properties Studied with Neutron Scattering. Frontiers In Chemistry9, 16 pages. DOI:10.3389/fchem.2021.642851

Kumarage, T.^G, Nguyen, J.^U, and Ashkar, R.* (2021). Neutron Spin Echo Spectroscopy as a Unique Probe for Lipid Membrane Dynamics and Membrane-Protein Interactions. Jove-Journal of Visualized Experiments, (171), 27 pages. DOI:10.3791/62396

Ashkar, R.*, Doktorova, M., Heberle, F. A., Scott, H. L., Barrera, F. N., Katsaras, J., . . . Brown, M. F. (2021). The universal stiffening effects of cholesterol on lipid membranes reply. Proceedings of the National Academy of Sciences of the United States of America, 118(20), 2 pages. DOI:10.1073/pnas.2102845118

Gupta, S.^P and Ashkar, R.* (2021). The dynamic face of lipid membranes. Soft Matter, 17(29), 6910-6928. DOI:10.1039/d1sm00646k

Coria LM, Saposnik LM, Pueblas Castro C, Castro EF, Bruno LA, Stone WB^G, Pérez PS, Darriba ML, Chemes LB, Alcain J, Mazzitelli I, Varese A, Salvatori M, Auguste AJ, Álvarez DE, Pasquevich KA, Cassataro J**. A Novel Bacterial Protease Inhibitor Adjuvant in RBD-Based COVID-19 Vaccine Formulations Containing Alum Increases Neutralizing Antibodies, Specific Germinal Center B Cells and Confers Protection Against SARS-CoV-2 Infection in Mice. Front Immunol. 2022 Feb 28;13:844837. DOI: 10.3389/fimmu.2022.844837.

López K^G, Wilson SN^U, Coutermash-Ott S, Tanelus M^G, Stone WB^G, Porier DL^G, Auguste DI, Muller JA^P, Allicock OM, Paulson SL, Erasmus JH, Auguste AJ**. Novel murine models for studying Cache Valley virus pathogenesis and in utero transmission. Emerg Microbes Infect. 2021 Dec;10(1):1649-1659. DOI:10.1080/22221751.2021.1965497.

Chaudhary S, Jain J, Kumar R, Shrinet J, Weaver SC, Auguste AJ, Sunil S**. Chikungunya virus molecular evolution in India since its re-emergence in 2005. Virus Evol. 2021 Aug 25;7(2): veab074. DOI: 10.1093/ve/veab074.

Adam A, Luo H, Osman SR, Wang B, Roundy CM, Auguste AJ, Plante KS, Peng BH, Thangamani S, Frolova EI, Frolov I, Weaver SC, Wang T**. Optimized production and immunogenicity of an insect virus-based chikungunya virus candidate vaccine in cell culture and animal models. Emerg Microbes Infect. 2021 Dec;10(1):305-316. DOI: 10.1080/22221751.2021.1886598.

CA Martinez-Gutierrez^G & FO Aylward. Genome size distributions in bacteria and archaea are strongly linked to phylogeny at broad phylogenetic scales. PLOS Genetics, In Press.

AR Weinheimer^G& FO Aylward. Infection strategy and biogeography distinguish cosmopolitan groups of jumbo bacteriophages. The ISME Journal. In Press.DOI: 10.1038/s41396-022-01214-x

BH Khairunisa, D Susanti, U Loganathan, CD Teutsch, BT Campbell, D Fiske, CA Wilkinson, FO Aylward, B Mukhopadhyay. Dominant Remodeling of Cattle Rumen Microbiome by Schedonorus arundinaceus (Tall Fescue) KY-31 Carrying a Fungal Endophyte. Access Microbiology, 2022, 4(2). DOI:10.1099/acmi.0.000322.

FO Aylward, M Moniruzzaman^P, AD Ha^P, EV Koonin. A phylogenomic framework for charting the diversity and evolution of giant viruses. PLOS Biology, 2021, 19(10). DOI:10.1371/journal.pbio.3001430

CA Martinez-Gutierrez^G & FO Aylward. Phylogenetic signal, congruence, and uncertainty across bacteria and archaea. Molecular Biology and Evolution, 2021. 38(12). DOI:10.1093/molbev/msab254

AD Ha^P, M Moniruzzaman^P, FO Aylward. High transcriptional activity and diverse functional repertoires of hundreds of fiant viruses in a coastal marine system. mSystems, 2021, 6(4). DOI:10.1128/mSystems.00293-21

Gagnon, D., E. Kasl, W. Pressier, L.K. Belden, and J.T. Detwiler. 2021. Morphological and molecular characterization of Quinqueserialis (Digenea: Notocotylidae) species diversity in North America. Parasitology 148: 1083-1091.DOI: 10.1017/S0031182021000792

Gregory, C.L.^G, R.D. Fell, L.K. Belden, and J.B. Walke^P. 2022. Classic hoarding cages increase gut bacterial abundance and reduce the individual immune response of honey bee workers. Journal of Insect Science 22: 1-5. DOI:10.1093/jisesa/ieac016

Hopkins, S.R.^G, C.M. McGregor, L.K. Belden, and J.M. Wojdak. 2022 Strong host preferences inhibit transmission from potential superspreader host species. Proceedings of the Royal Society B 289: 20220084. DOI:10.1098/rspb.2022.0084

Hughey, M.C.^P, E.A. Rebollar, R.N. Harris, R. Ibáñez, S.C. Loftus, L.L. House, K.P.C. Minbiole, M.C. Bletz, D. Medina^G, W.R. Shoemaker, M.C. Swartwout^U, and L.K. Belden. An experimental test of disease resistance function in the skin-associated bacterial communities of three tropical amphibian species. FEMS Microbiology Ecology 98: fiac023. DOI: 10.1093/femsec/fiac023

Jia M^P, Taylor TM, Senger SM, Ovissipour R, Bertke AS. 2022. SARS-CoV-2 remains infectious on refrigerated deli food, meats, and fresh produce for up to 21 days. Foods. 2022 Jan 21;11(3):286. DOI: 10.3390/foods11030286.

Jia M^P, Joyce JD^G, Bertke AS. 2022. SARS-CoV-2 survival in common non-alcoholic and alcoholic beverages. Foods. 2022 Mar 10;11(6):802. DOI: 10.3390/foods11060802.

Goswami P^G, Ives AM^G, Abbott ARN^U, Bertke AS. 2022. “Stress Hormones Epinephrine and Corticosterone Selectively Reactivate HSV-1 and HSV-2 in Sympathetic and Sensory Neurons” Viruses. 2022 May 23;14(5):1115. DOI:10.3390/v14051115.

Joyce JD^G, Moore GA^G, Goswami P^G, Leslie EH^G, Thompson CK, Bertke AS. 2022. SARS-CoV-2 infects peripheral and central neurons of mice before viremia, facilitated by neuropilin-1. bioRxiv. DOI: 10.1101/2022.05.20.492834

Roesch, F.; Cereghino, C.; Carrau, L.; Hardy, A.; Ribeiro-Filho, H.; Lacritick, A. H.; Koh, C.; Marano, J.; Bates, T.; Rai, P.; Chuong, C.; Akter, S.; Vallet, T.; Blanc, H.; ^UElliot, T.; Brown, A. M.; Michalak, P.; LeRoith, T.; Bloom, J.; Marques, R. E.; Saleh, M.-C.; Vignuzzi, M.; Weger-Lucarelli, J. (2022). The E2 glycoprotein holds key residues for Mayaro virus adaptation to the urban Aedes aegypti mosquito. DOI: 10.1101/2022.04.05.487100

King, K.M^G., Bevan, D.R., and Brown, A.M^*. (2022). “Molecular Dynamics Simulations Indicate Aromaticity as a Key Factor in Inhibition of IAPP_(20-29) Aggregation.” ACS Chem. Neur. In Press. DOI: 10.1021/acschemneuro.2c00025

Sharp, A.K^G., Newman, D., Libonate, G., Stern, M.B., Bevan, D.R., Anandakrishnan, R., and Brown, A.M^*. (2022). “Biophysical insights into OR2T7: Investigation of a potential prognostic marker for glioblastoma.” Biophys. J. Online Ready. DOI: 10.1016/j.bpj.2022.05.009

Kawecki, G^U*., ^GKing, K.M., Cramer, N^U*., Bevan, D.R. and Brown, A.M^*. (2022). “Simulations of Cross-Amyloid Aggregation of Amyloid-β and Islet Amyloid Polypeptide Fragments.” Biophys. J. Online Ready. DOI: 10.1016/j.bpj.2022.05.007

King, K.M^G., ^GSharp, A.K., Davidson, D.S., Lemkul, J.A., and Brown, A.M^#. (2021). “Impact of Electronic Polarization on Preformed, β-Strand Rich Homogenous and Heterogeneous Amyloid Oligomers”. J. Comp. Biophys. Chem. 21(4) pp. 449-460. DOI:10.1142/S2737416521420059

Kang, L., He, G., ^GSharp, A.K., Wang, X., Brown, A.M., Michalak, P. and Weger-Lucarelli, J., 2021. A selective sweep in the Spike gene has driven SARS-CoV-2 human adaptation. Cell, 184(17), pp.4392-4400. DOI:10.1016/j.cell.2021.07.007

Piai, A., Fu, Qingshan, F., ^GSharp, A.K., Bighi, B., Brown, A.M^#., and Chou, J.J. NMR Model of the Entire Membrane-Interacting Region of the HIV-1 Fusion Protein and Its Perturbation of Membrane Morphology. J. Am. Chem. Soc. 43 (17), 6609-6615. DOI:10.1021/jacs.1c01762

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Zhang, H., Li, Q., Edgar, K. J., Yang, G., & Shao, H. (2021). “Structure and properties of flax vs. lyocell fiber-reinforced polylactide stereocomplex composites.” CELLULOSE, 28(14), 9297-9308. DOI: 10.1007/s10570-021-04105-0

Chen, J.^G, Frazier, C. E., & Edgar, K. J. (2021). “In situ forming hydrogels based on oxidized hydroxypropyl cellulose and Jeffamines.” CELLULOSE, 28(18), 11367-11380. DOI: 10.1007/s10570-021-04272-0

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Castaneda-Guzman M^G, Mantilla Santos G, Murray K, Settlage R, Escobar LE*. (2021) “A Database of global coastal conditions.” Scientific Data. 8, 304. (IF 5.541) DOI: 10.1038/s41597-021-01081-9

Escobar LE* & Serge Moran. (2021) “Disease ecology and biogeography.” Frontiers in Veterinary Sciences. 8, 765825 (IF 3.412) DOI: 10.3389/fvets.2021.765825

Romanello M, McGushin A, Di Napoli C, Drummond P, Hughes N, Jamart L, Kennard H, Lampard P, Solano Rodriguez B, Arnell N, Ayeb-Karlsson S, Belesova K, Cai W, Campbell-Lendrum D, Capstick S, Chambers J, Chu L, Ciampi L, Dalin C, Dasandi N, Dasgupta S, Davies M, Dominguez-Salas P, Dubrow R, Ebi KL, Eckelman M, Ekins P, Escobar LE, Georgeson L, Grace d, Graham H, Gunther SH, Hartinger S, He K, Heaviside C, Hess J, Hsu SC, Jankin S, Jimenez MP, Kelman I, Kiesewetter G, Kinney P, Kjellstrom T, Kniveton D, Lee JKW, Lemke B, Liu Y, Liu Z, Lott M, Lowe R, Martinez-Urtaza J, Maslin M, McAllister L, McMichael C, Mi Z, Milner J, Minor K, Mohajeri N, Moradi-Lakeh M, Morrissey K, Munzert S, Murray KA, Neville T, Nilsson M, Obradovich N, Odhiambo Sewe M, Oreszczyn T, Otto M, Owfi F, Pearman O, Pencheon D, Rabbaniha M, Robinson E, Rocklöv J, Salas RN, Semenza JC, Sherman J, Shi L, Springmann M, Tabatabaei M, Taylor J, Trinanes J, Shumake-Guillemot J, Vu B, Wagner F, Wilkinson P, Winning M, Yglesias M, Zhang Peng Gong S, Montgomery H, Costello A, Hamilton I. (2021) “The 2021 Report of The Lancet Countdown on Health and Climate Change.” The Lancet. 398, 1619-1662. (IF 60.392) DOI: 10.1016/S0140-6736(21)01787-6

Oliveira-Santos GR, Moore SA, Severud WJ, Forester JD, Isaac EJ, Chenaux-Ibrahim Y, Garwood T, Escobar LE, Wolf TM. “Spatial compartmentalization: a nonlethal predator mechanism to reduce parasite transmission between prey species.” Science Advances. 14. (IF: 14.14) DOI: 10.1126/sciadv.abj5944

Van de Vuurst P^G, Moore SA, Wolf TM, Isaac EJ, Ibrahim YC, and Escobar LE*. (2021). “Reconstructing landscapes of ungulate predation.” Current Zoology. zoab058. (IF 2.686) DOI:10.1093/cz/zoab058

Worsley-Tonks K, Gehrt SD, Anchor C, Escobar LE, Craft M. “Infection risk varies within urbanized landscapes – the case of coyotes and heartworm.” Parasites & Vectors. 14, 464. (IF 3.234, #9 journal of Parasitology) DOI: 10.6084/m9.figshare.15169146.v1

Binkley L, Deressa A, Shi M, Mauldin MR, Jara M, Escobar LE, O’Quin J, Matheny A, Shiferaw M, Pieracci EG, Kling C, Hartloge C, Reynolds M, Gebreyes W, Yimer G, Abate E, Belay E, Nakazawa N, Velasco-Villa A. (2021) “Use of partial N-gene sequences as a tool to monitor progress on rabies control and elimination efforts in Ethiopia.” Acta Tropica. 221, 106022. (IF 2.555) DOI: 10.1016/j.actatropica.2021.106022

Kao SY, Enns EA, Tomamichel M, Doll A, Escobar LE, Qiao H, Craft ME, Phelps NBD. (2021) “Network connectivity patterns of Minnesota waterbodies and implications for aquatic invasive species prevention.” Biological Invasions. 23, 3231–3242. (IF 3.087) DOI: 10.13020/DJW8-2V86

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Winter SN^G, Kirchgessner M, Frimpong E, Escobar LE*. 2021. “A landscape epidemiological approach for chronic wasting disease: A case study in Virginia, US.” Frontiers in Veterinary Sciences. 8, 698767. (IF 3.412) DOI: 10.3389/fvets.2021.698767

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Marco E. Mechan Llontop^G, Parul Sharma^G, Marcela Aguilera Flores^G, Shu Yang, Jill Pollock, Long Tian, Chenjie Huang, Lenwood S. Heath, Steve Rideout, Song Li, and Boris A. Vinatzer. 2020. “Strain-level Identification of Bacterial Tomato Pathogens Directly from Metagenomic Sequences.” Phytopathology 110: 12 pages. DOI: 10.1094/phyto-09-19-0351-r

Parul Sharma^G, Marcela A. Johnson^G, Reza Mazloom^G, Caitilyn Allen, Lenwood S. Heath, Tiffany M. Lowe-Power, and Boris A. Vinatzer. 2022. “Meta Analysis of the Ralstonia solanacearum Species Complex (RSSC) Based on Comparative Evolutionary Genomics and Reverse Ecology.” Microbial Genomics 8: 14 pages. DOI: 10.1099/mgen.0.000791

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Hashmi, H., Glenn, J.E., Bennett, A.M., Tajuddin, N.N., Hester, R.J., (2021) “Qualitative exploration of the medical learner's journey into correctional health care at an academic medical center and its implications for medical education.” Advances in Health Sciences Education. DOI: 10.1007/s10459-020-09997-4

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Aung T^G, Batish I^G, Ovissipour R. “Prevalence of Microplastics in the Eastern Oyster Crassostrea virginica in the Chesapeake Bay: The Impact of Different Digestion Methods on Microplastic Properties.” Toxics. 2022 Jan;10(1):29. DOI: 10.3390/toxics10010029

Delerue T, Anantharaman V, Gilmore MC, Popham DL, Cava F, Aravind L, Ramamurthi KS. “Bacterial developmental checkpoint that directly monitors cell surface morphogenesis.” (2022) Dev Cell. Feb 7;57(3):344-360.e6. DOI: 10.1016/j.devcel.2021.12.021

Moir, A. and Popham, D.L. (2022) “Genetic suppression meets structure prediction: probing a spore germination receptor complex.” J Bacteriol. Feb 15;204(2):e0057921 DOI: 10.1128/JB.00579-21

Mapili, K.^G; Rhoads, W.J.^P; Coughter, M.; Pieper, K.J.^P; Edwards, M.A.; and Pruden, A. (2022). “Occurrence of opportunistic pathogens in private wells after major flooding events: A four state molecular survey.” Science of the Total Environment, 826, 11 pages. DOI: 10.1016/j.scitotenv.2022.153901

Kormos, D.^G; Lin, K.^P; Pruden, A.; and Marr, L.C. (2022). “Critical review of antibiotic resistance genes in the atmosphere.” Environmental Science: Process and Impacts, 14 pages. DOI: 10.1039/d2em00091a

Cohen, A.; Maile-Moskowitz, A.^G; Grubb, C.; Gonzalez, R.A.; Ceci, A.; Darling, A.^G; Hungerford, L.; Fricker Jr., R.D.; Finkielstein, C.V.; Pruden, A.; and Vikesland, P. J. (2022). “Subsewershed SARS-CoV-2 Wastewater Surveillance and COVID-19 Epidemiology Using Building-Specific Occupancy and Case Data.” ACS ES& T Water. DOI: 10.1021/acsestwater.2c00059

Proctor, C.^G; Garner, E.^P; Hamilton, K.A.; Ashbolt, N.J.; Caverly, L.J.; Falkinham, J.O.; Haas, C.N.; Prevost, M.; Prevots, D.R.; Pruden, A.; Raskin, L., Stout, J.; Haig, S. J. (2022). “Tenets of a holistic approach to drinking water-associated pathogen research, management, and communication.” Water Research, 211, 22 pages. DOI: 10.1016/j.watres.2021.117997

Dai, D.^P; Brown, C.^G; Burgmann, H.; Larsson, D. G. J.; Nambi, I.; Zhang, T.; Flach, C-F.; Pruden, A.; and Vikesland, P. J. (2022). “Long-read metagenomic sequencing reveals shifts in associations of antibiotic resistance genes with mobile genetic elements from sewage to activated sludge.” Microbiome, 10(1), 16 pages. DOI: 10.1186/s40168-021-01216-5

Xie, J., Jin, L., Wu, D., Pruden, A., and Li, X. (2022). “Inhalable Antibiotic Resistome from Wastewater Treatment Plants to Urban Areas: Bacterial Hosts, Dissemination Risks, and Source Contributions.” Environmental Science and Technology, 12 pages. DOI: 10.1021/acs.est.1c07023

Keenum, I.^G; Liguori, K.^G; Calarco, J.^G; Davis, B.C.^G; Milligan, E.^G; Harwood, V.J.; and Pruden, A. (2021). “A framework for standardized qPCR-targets and protocols for quantifying antibiotic resistance in surface water, recycled water and wastewater.” Critical Reviews in Environmental Science and Technology, 25 pages. DOI: 10.1080/10643389.2021.2024739

Hassoun-Kheir, N.; Stabholz, Y.; Kreft, J. -U.; de la Cruz, R.; Dechesne, A.; Smets, B. F.; Romalde, J.L.; Lema, A.; Balbo, S.; García-Riestra, C.; Torres-Sangiao, E.; Neuberger, A.; Graham, D.; Quintela-Baluja, M.; Stekel, D.J.; Graham, J.; Pruden, A.; Nesme, J.; and Paul, M. (2021). “EMBRACE-WATERS statement: Recommendations for reporting of studies on antimicrobial resistance in wastewater and related aquatic environments.” One Health, 13, 9 pages. DOI: 10.1016/j.onehlt.2021.100339

Pruden, A., Vikesland, P. J., Davis, B. C.^G, and de Roda Husman, A.M. (2021). “Seizing the moment: now is the time for integrated global surveillance of antimicrobial resistance in wastewater environments.” Current Opinion in Microbiology, 64, 91-99. DOI: 10.1016/j.mib.2021.09.013

Garner, E.^P; Organiscak, M.; Dieter, L.; Shingleton, C.; Haddix, M.; Joshi, S.; Pruden, A.; Ashbolt, N.J.; Medema, G.; and Hamilton, K.A. (2021). “Towards risk assessment for antibiotic resistant pathogens in recycled water: a systematic review and summary of research needs.” Environmental Microbiology, 23(12), 7355-7372. DOI: 10.1111/1462-2920.15804

Garner, E.^P; Davis, B. C.^G; Milligan, E.^G; Blair, M. F.^G; Keenum, I.^G; Maile-Moskowitz, A.^G; Pan, J.^G; Gnegy, M.^G; Liguori, K.^G; Gupta, S.^G; Prussin, A.J.^P; Marr, L.C.; Heath, L.S.; Vikesland, P.J.; Zhang, L.; Pruden, A. (2021). “Next generation sequencing approaches to evaluate water and wastewater quality.” Water Research, 194, 24 pages. DOI: 10.1016/j.watres.2021.116907

Lee, J.; Ju, F.; Maile-Moskowitz, A.^G; Beck, K.; Maccagnan, A.; McArdell, C.S.; Dal Molin, M.; Fenicia, F.; Vikesland, P.J.; Pruden, A.; Stamm, C.; and Buergmann, H. (2021). “Unraveling the riverine antibiotic resistome: The downstream fate of anthropogenic inputs.” Water Research, 197, 12 pages. DOI: 10.1016/j.watres.2021.117050

Moralez, J.; Szenkiel, K.; Hamilton, K.A.; Pruden, A.; and Lopatkin, A.J. (2021). “Quantitative analysis of horizontal gene transfer.” Current Opinion in Microbiology, 62:103-109, DOI: 10.1016/j.mib.2021.05.001 .

Ghosh, S.^P; Zhu, N.^G; Milligan, E.^G; Falkinham, J.O. III; Pruden, A.; Edwards, M.A. (2021). “Mapping the Terrain for Pathogen Persistence and Proliferation in Non-potable Reuse Distribution Systems: Interactive Effects of Biofiltration, Disinfection, and Water Age.” Environmental Science and Technology. 55(18):12561–12573. DOI: 10.1021/acs.est.1c02121

Zhu, N.^G; Ghosh, S.^P; Pruden, A.; Edwards, M.A. (2021). “Interplay of Biologically Active Carbon Filtration and Chlorine-Based Disinfection in Mitigating the Dissemination of Antibiotic Resistance Genes in Water Reuse Distribution Systems.” Environmental Science and Technology. DOI: 10.1021/acs.est.1c01199

Guron, G.K.^P: Chen, C.^P; Du, P.; Pruden, A.; and Ponder, M. (2021). “Manure-Based Amendments Influence Surface-Associated Bacteria and Markers of Antibiotic Resistance on Radishes Grown in Soils with Different Textures.” Applied and Environmental Microbiology. 87(10); DOI: 10.1128/AEM.02753-20

Gerasimov, E.S.; Ramirez-Barrios, R.; Yurchenko, V.; Zimmer, S.L. 2022. “Trypanosoma cruzi strain and starvation-driven mitochondrial RNA editing and transcriptome variability.” RNA; 079088.121. DOI: 10.1261/rna.079088.121

Christopher Childers, Connor Edsall, Isabelle Mehochko, Waleed Mustafa, Yasemin Yuksel Durmaz, Alexander Klibanov, Jayasimha Rao, Eli Vlaisavljevich. “Particle-mediated Histotripsy for the Targeted Treatment of Catheter-based Medical Device Biofilms.” BME Frontiers. (In Press).

Nowak, E.S., Bansal, E., Baffoe-Bonnie, A.W., Nammalwar, S., Kerkering, T. K., and Rao, J. (2021). “Biofilm Formation in Acinetobacter baumannii Clinical Isolates.” Open Forum Infectious Diseases, Volume 8, Issue Supplement_1, November 2021, Page S595, DOI: 10.1093/ofid/ofab466.1203.

Rao J, Adenikinju A, Kerkering TM, Garner DC, Jensen RV. 2021. “Complete genome sequence of Pseudomonas aeruginosa CMC-097, isolated from a ventilator-associated pneumonia patient, containing a novel carbapenem resistance class 1 integron.” Microbiol Resour Announc. Volume 10 Issue 35 e00774-21. DOI: 10.1128/MRA.00774-21.

Rao J, Adenikinju A, Gray JM, Colpitts L, Prorock A, Bao Y, Kerkering TM, Garner DC, and Jensen RV (2021). “Comparative transcriptomic analysis of Pseudomonas aeruginosa isolates from ICU patients with acute and chronic pneumonia.” Int Arch of Med Microbiol. 30:012. DOI: 10.23937/2643-4008/1710012.

Childers C, Edsall C, Gannon J, Whittington A, Muelenaer A, Rao J, Vlaisavljevich E (2021). “Focused Ultrasound Biofilm Ablation: Investigation of Histotripsy for the Treatment of Catheter-Associated Urinary Tract Infections (CAUTIs).” IEEE Transactions on Ultrasonics, Ferroelectrics, and Frequency Control 1. DOI: 10.1109/TUFFC.2021.3077704.

Marathe, A., Shi, R., Mendez-Lopez, A., Hu, Z., Lewis, B., Rabinovich, R., ... & Rist, C. (2021). “Potential impact of 5 years of ivermectin mass drug administration on malaria outcomes in high burden countries.” BMJ global health, 6(11), e006424. DOI: 10.1136/bmjgh-2021-006424.

Ruiz-Castillo, P., Rist, C., Rabinovich, R., & Chaccour, C. (2021). “Insecticide-treated livestock: a potential One Health approach to malaria control in Africa. Trends in parasitology.” DOI: 10.1016/j.pt.2021.09.006

Ruktanonchai, C. W., Lai, S., Utazi, C. E., Cunningham, A. D., Koper, P., Rogers, G. E., . . . Sorichetta, A. (2021). “Practical geospatial and sociodemographic predictors of human mobility”. SCIENTIFIC REPORTS, 11(1), 14 pages. DOI: 10.1038/s41598-021-94683-7

Hu, M., Wang, J., Lin, H., Ruktanonchai, C. W., Xu, C., Meng, B., . . . Lai, S. (2021). “Risk of SARS-CoV-2 Transmission among Air Passengers in China.” Clinical infectious diseases : an official publication of the Infectious Diseases Society of America, ciab836. DOI: 10.1093/cid/ciab836

Lai, S., Ruktanonchai, N. W., Carioli, A., Ruktanonchai, C. W., Floyd, J. R., Prosper, O., . . . Tatem, A. J. (2021). “Assessing the Effect of Global Travel and Contact Restrictions on Mitigating the COVID-19 Pandemic.” ENGINEERING, 7(7), 914-923. DOI: 10.1016/j.eng.2021.03.017

Lai, S., Sorichetta, A., Steele, J., Ruktanonchai, C. W., Cunningham, A. D., Rogers, G., . . . Tatem, A. J. (2022). “Global holiday datasets for understanding seasonal human mobility and population dynamics.” SCIENTIFIC DATA, 9(1), 13 pages. DOI: 10.1038/s41597-022-01120-z

Ge, Y., Zhang, W. -B., Liu, H., Ruktanonchai, C. W., Hu, M., Wu, X., . . . Lai, S. (2022). “Impacts of worldwide individual non-pharmaceutical interventions on COVID-19 transmission across waves and space.” INTERNATIONAL JOURNAL OF APPLIED EARTH OBSERVATION AND GEOINFORMATION, 106, 9 pages. DOI: 10.1016/j.jag.2021.102649

Murray, J.H.; Santos, W.L. “Bis(1,1-dimethylethyl)[2′,4′,6′-tris-(1-methylethyl)[1,1′-biphenyl]-2-yl]-phosphine and Dicyclohexyl[2′,4′,6′-tris(1-methylethyl)[1,1′-biphenyl]-2-yl]phosphine (XPhos).” e-EROS Encyclopedia of Reagents for Organic Synthesis, 2021, DOI: 10.1002/047084289X.rn00923.pub4.

Chen, S-Y; Beretta, M.; Alexopoulos, S.J.; Shah, D.; Olzomer, E.M.; Hargett, S.R.; Childress, E.S.; Salamoun, J.M.; Roseblade, A.; Cranfield, C.; Rawling, T.; Tucker, S.P.; Santos, W.L.; Hoehn, K.L. “Potent mitochondrial uncoupler SHC517 reverses diet-induced obesity in mice.” Metabolism 2021, 117, 154724. DOI: 10.1016/j.metabol.2021.154724

Bose, S.;* Mao, L.;* Kuehn, L.; Radius, U.;* Nekvinda, J.; Santos, W.L.;* Westcott, S.A.;* Steel, P.G.;* Marder, T.B.* “First-Row d-Block Element-Catalyzed Carbon-Boron Bond Formation and Related Processes.” Chem. Rev. 2021, 21, 13238–13341. DOI: 10.1021/acs.chemrev.1c00255.

Grams, R.J.; Lawal, M.M.; Szwetkowski, C.; Foster, D.; Rosenblum, C.A.; Slebodnick, C.; Welborn, V.V.; Santos, W.L. “Organocatalytic trans Semireduction of Primary and Secondary Propiolamides: Substrate Scope and Mechanistic Studies.” Adv. Syn. Cat. 2022, 364, 172-178. DOI: 10.1002/adsc.202101020

Gates, A.M.; Jos, S.; Santos, W.L. “Ligand-free copper-catalyzed borylative defluorination: Access to gem-difluoroallyl boronic acid derivatives.” Org. Biomol. Chem. 2022, 20, 366-374. DOI: 10.1039/D1OB01533H.

Szwetkowski, C.; Slebodnick, C.; Santos, W.L. “Regio- and stereoselective copper-catalyzed β, γ-protoboration of allenoates.” Org. Biomol. Chem. 2022, 20, 3287-3291. DOI: 10.1039/D2OB00423B

Bowen, J.; Slebodnick, C.; Santos, W.L. “Phosphine-catalyzed Hydroboration of Propiolonitriles: Access to (E)-1,2-vinylcyanotrifluoroborate derivatives.” Chem. Commun. 2022, 58, 5984–5987. DOI: 10.1039/D2CC00603K

Fritzemeier, R.G.; Foster, D.; Peralta, A.; Payette, M.; Kharel, Y.; Lynch, K.R.; Santos, W.L. “Discovery of in vivo active sphingosine-1-phosphate transporter Spns2 inhibitors.” J. Med. Chem. 2022, in press. DOI: 10.1021/acs.jmedchem.1c02171

Oyewole, O.; Dunnavant, K.; Bhattarai, S.; Kharel, Y.; Lynch, K.L.; Santos, W.L.; Reid, S.P. “A Novel Sphingosine Kinase Inhibitor Suppresses Chikungunya Virus Infection.” Viruses, 2022, 14, 1123. DOI: 10.3390/v14061123

Jos, S.; Szwetkowski, C.; Slebodnick, C.; Ricker, R.; Chan, K.L.; Chan, W.C.; Radius, U.; Lin, Z.; Marder, T.B.; Santos, W.L. “Transition Metal-Free Regio- and Stereo- Selective trans Hydroboration of 1,3-Diynes: A Phosphine Catalyzed Access to (E)-1-Boryl-1,3-Enynes.” Angew. Chem. Int. Ed. 2022, under review.

Pashikanti, S.; Foster, D.; Kharel, Y.; Brown, A.M.; Bevan, D.R.; Lynch, K.R.; Santos, W.L. “In Vivo Active Sphingosine Kinase 2 Inhibitors: Probing Rigid Aliphatic Tail Derivatives Delivers Potent and Selective Analogs.” ACS Bio & Med Chem Au, 2022, revision submitted.

Tanaka, s.; Zheng, S.; Kharel, Y.; Fritzemeier, R.G.; Huang, T.; Foster, D.; Poudel, N.; Goggins, E.; Yamaoka, Y.; Rudnicka, K.P.; Lipsey, J.E.; Radel, H.V.; Ryuh, S.M.; Inoue, T.; Yao, J.; Rosin, D.L.; Schwab, S.R.; Santos, W.L.; Lynch, K.R.; Okusa, M.D. “S1P signaling in perivascular cells enhancesinflammation and fibrosis in the kidney.” Science Trans. Med. 2022, accepted.

Garcia, C.J.; Salamoun, J.M.; Hargett, S.R.; Murray, J.; Chen, S-Y; Beretta, M.; Alexopoulos, S.J.; Shah, D.; Olzomer, E.M.; Tucker, S.P.; Hoehn, K.L. and Santos, W.L. “6-(Biphenylamino)-[1,2,5]oxadiazolo[3,4-b]pyrazin-5-ol Derivatives As Mild Mitochondrial Uncouplers for Treating NASH.” 2022, Under review.

Dai, Y.; Santiago-Rivera, J.A.; Hargett, S.; Hoehn, K.L.; Santos, W.L. “Synthesis of imidazo[4,5-b]pyrazine derivatives from oxadiazolo[3,4-b]pyrazines via a tandem reduction-cyclization sequence and evaluation as mitochondrial uncouplers.” 2022, under review.

Hwang K^U., Edholm C., Saucedo O., Allen L., Shakiba N. “Investigating the Role of "Silent Spreaders" in COVID-19 Dynamics.” (Accepted Bulletin of Mathematical Biology 2022)

Vargas E., Saucedo O., Tien J.H. “Relating Eulerian and Lagrangian Spatial Models for Vector-host Disease Dynamics through Fundamental Matrix.” (Accepted Journal of Mathematical Biology 2022)

Baaziz^P, H., K.K. Compton^G, HildrethS.B., HelmR.F., ScharfB.E. 2021. “McpT, a broad range carboxylate chemoreceptor in Sinorhizobium meliloti.” Journal of Bacteriology 203(17): 1-16. DOI: 10.1128/JB.00216-21

Kreutzberger, M.A.B., Sobe R.^G, Sauder A.B., ChatterjeeS., PenaA., WangF., GironJ.A., KiesslingV., Costa T.R.D., ConticelloV.P., FrankelG., KendallM.M., ScharfB.E.* EgelmanE.H.* 2022. “Dimerization and tetramerization of flagellin outer domains modulate polymorphism and motility in pathogenic E. coli and soil bacteria.” Nature Communications, 7;13(1):1422. DOI: 10.1038/s41467-022-29069-y *Co-corresponding authors

Iliff^U, G., Mukherjee^G, R., Gruszewski, H., Schmale, D.G., Jung, S., and Boreyko, J. 2022. “Phase-change-mediated transport and agglomeration of fungal spores on wheat awns. Journal of the Royal Society Interface.” Accepted. DOI: 10.1098/rsif.2021.0872

Moeltner, K.,, Fanara, T., Foroutan, H., Hanlon, R., Lovko, V., Ross, S., and Schmale, D.G. 2022. “Harmful algal blooms and toxic air: The economic value of improved forecasts.” Marine Resource Economics. Accepted.

Filippi, M., Hanlon, R., Rypina, I., Hodges, B., Peacock, T., and Schmale, D.G. 2021. “Tracking a surrogate hazardous agent (rhodamine dye) in a coastal ocean environment using in situ measurements and concentration estimates derived from drone images.” Remote Sensing, 13(21), 4415. DOI: 10.3390/rs13214415

Del Ponte, E., et al. 2022. “Fusarium graminearum species complex: a bibliographic analysis and web-accessible database for global mapping of species and trichothecene toxin chemotypes.” Phytopathology, Vol. 112, No. 4. DOI: 10.1094/PHYTO-06-21-0277-RVW

Pack^G, E., Weiland, S., Musser, R., Schmale, D.G. 2021. “Survey of zearalenone and type-B trichothecene mycotoxins in swine feed in the United States of America.” Mycotoxin Research, 37: 297–313. DOI: 10.1007/s12550-021-00442-y

Baloh^G, P., Hanlon, R., Anderson, C., Dolan, E., Pacholik, G., Stinglmayr, D., Burkart, J., Felgitsch, L. Schmale, D., Grothe, H. 2021. “Seasonal ice nucleation activity of water samples from alpine rivers and lakes in Obergurgl, Austria.” Science of The Total Environment, 800: 149442. DOI: 10.1016/j.scitotenv.2021.149442

Mukherjee^G, R., Gruszewski, H., Bilyeu^G, L., Schmale, D.G., Boreyko, J. 2021. “Synergistic Dispersal of Plant Pathogen Spores by Jumping-Droplet Condensation and Wind.” Proceedings of the National Academy of Science. 118 (34) e2106938118. DOI: 10.1073/pnas.2106938118

Pack^G, E., Meyerhoff, K., Schmale, D.G. 2021. “Tracking zearalenone and type-B trichothecene mycotoxins in the commercial production of beer and brewers’ spent grains.” Journal of American Society of Brewing Chemists, 180-189. DOI: 10.1080/03610470.2021.1938489

Seifried, T., Bieber, P., Kunert, A., Schmale, D.G., Whitmore, K., Frohlich-Nowoisky, J, and Grothe, H. 2021. “Ice nucleation activity of alpine bioaerosol emitted in vicinity of a birch forest.” Atmosphere, 12(6):779. DOI: 10.3390/atmos12060779

Harb^G, C., Pan^G, J., DeVilbiss, S., Badgley, B., Marr, L., Schmale, D., Foroutan, H. 2021. “Increasing Freshwater Salinity Impacts Aerosolized Bacteria.” Environmental Science and Technology, 55 (9): 5731–5741. DOI: 10.1021/acs.est.0c08558

Nave^G, G., Hall^G, N., Somers^U, K., Davis^U, B., Gruszewski, H., Powers^P, C., Collver, C., Schmale, D.G., Ross, S.D., Shane D. “Wind dispersal of natural and biomimetic maple samaras.” 2021. Biomimetics 6: 23. DOI: 10.3390/biomimetics6020023

Ristaino, J.B., Anderson, P., Bebber, D., Brauman, K.A., Cunniffe, N.J., Federoff, N., Finegold, C., Garrett, K.A., Gilligan, C.A., Jones, C., Martin, M., MacDonald, G.K., Neenan, P., Records, A., Schmale, D.G., Tateosian, L., Wei, Q. 2021. “The Persistent Threat of Emerging Plant Disease Pandemics to Global Food Security.” Proceedings of the National Academy of Sciences. 118 (23) e2022239118. DOI: 10.1073/pnas.2022239118

Machado^G, F., Kunem^G, P.R., Casa, R.T., McMaster, N., Schmale, D.G., Vaillancourt, L., Del Ponte, E. 2021. “The dominance of Fusarium meridionale over F. graminearum causing Gibberella ear rot in Brazil may be due to increased aggressiveness and competitiveness.” Phytopathology, 111(10):1774-1781. DOI: 10.1094/PHYTO-11-20-0515-R

Gonzalez-Rocha^G, J., Sosa^U, A., Hanlon, R., Allen, A., Rypina, I., Schmale, D.G., and Ross, S.D. 2021. “Multirotor-assisted measurements of wind-induced drift of irregularly shaped objects in aquatic environments”. Applied Ocean Research 110: 102538. DOI: 10.1016/j.apor.2021.102538

Archer, W. R.^G; Gallagher, C.^G; Welborn, V. V.; and Schulz, M. D.* “Exploring the role of polymer hydrophobicity in polymer–metal binding thermodynamics” Phys. Chem. Chem. Phys. 2022, 24, 3579–3585. DOI: 10.1039/D1CP05263B

Archer, W. R.^G; Iftekhar, N.^G; Fiorito, A.^U; Winn, S.^U; and Schulz, M. D.* “Synthesis of Phosphonated Polymer Resins for the Extraction of Rare-Earth Elements” ACS Appl. Polym. Mater. 2022, 4, 2506–2512. DOI: 10.1021/acsapm.1c01813

Rusha Pal ^G, Ahmad IM Athamneh, Riddhi Deshpande, Jose AR Ramirez, Kayode T Adu, Pushpanathan Muthuirulan, Shrikant Pawar, Manuele Biazzo, Yiorgos Apidianakis, Ulrik Kraemer Sundekilde, Cesar de la Fuente-Nunez, Mark G Martens, George P Tegos, Mohamed N Seleem. (2022). “Probiotics: insights and new opportunities for Clostridioides difficile intervention.” Critical Reviews in Microbiology. 1-21. 2022. DOI: 10.1080/1040841X.2022.2072705

Mohamed M Elsebaie, Hanzada T Nour El-Din, Nader S Abutaleb, Abdelrahman A Abuelkhir, Hsin-Wen Liang, Ahmed S Attia, Mohamed N Seleem, Abdelrahman S Mayhoub. (2022). “Exploring the structure-activity relationships of diphenylurea as an antibacterial scaffold active against methicillin-and vancomycin-resistant Staphylococcus aureus.” European Journal of Medicinal Chemistry. 234, 15 2022, 114204. DOI: 10.1016/j.ejmech.2022.114204

Carswell W, Robertson JL, Senger RS. “Raman Spectroscopic Detection and Quantification of Macro- and Microhematuria in Human Urine.” Applied Spectroscopy. 2022;76(3):273-283. DOI: 10.1177/00037028211060853

Senger RS, Sayed Issa A, Agnor B, Talty J, Hollis A, Robertson JL. “Disease-Associated Multimolecular Signature in the Urine of Patients with Lyme Disease Detected Using Raman Spectroscopy and Chemometrics.” Appl Spectrosc. 2022 Mar;76(3):284-299. Epub 2022 Feb 1. PMID: 35102746.DOI: 10.1177/00037028211061769.

Xu Y, Du P, Robertson JL, Senger RS “Sparse logistic regression on functional data. 2021” arXiv:2106.10583. DOI: 10.48550/arXiv.2106.10583

Owen Q, Senger RS, Robertson JL, Choudhury D. “POS-338 Urine spectroscopy in the differentiation of simple and complex renal cysts.” Kidney International Reports 7(2):S174-5.

Scherr^G, D., Senger^C, R.S. “Selection of exogenous mediators and environment for in vitro photosynthesis and a biosensor to monitor electron harvest.” 2021. PeerJ. In revision.

Robertson^C, J.L., Senger, R.S., Talty, J., Du, P., Sayed Issa^R, A., Avellar, M.L., Ngo, L.T., Gomez de La Espriella, M.,Fazili, T., Jackson-Akers, J.Y., Guruli, G. “Alterations in the molecular composition of COVID-19 patient urine, detected using Raman spectroscopic/computational analysis.” 2021. In Press.

Artemov, G. N., Fedorova, V. S., Karagodin, D. A., Brusentsov, I. I., Baricheva, E. M., Sharakhov, I. V., Gordeev, M.I., Sharakhova, M. V. 2021. “New Cytogenetic Photomap and Molecular Diagnostics for the Cryptic Species of the Malaria Mosquitoes Anopheles messeae and Anopheles daciae from Eurasia.” Insects, 12(9), 16 pages. DOI: 10.3390/insects12090835

Lukyanchikova V., Nuriddinov M., Belokopytova P., Taskina A., Liang J.^P, Reijnders M.J.M.F., Ruzzante L., Feron R., Waterhouse R.M., Wu Y., Mao C., Tu Z., Sharakhov I.V., Fishman V. 2022. “Anopheles mosquitoes reveal new principles of 3D genome organization in insects.” Nat Commun. Apr 12;13(1):1960. DOI: 10.1038/s41467-022-29599-5

Hodge, J. M., Yurchenko, A. A., Karagodin, D. A., Masri, R. A., Smith, R. C., Gordeev, M. I., & Sharakhova, M. V. (2021). “The new Internal Transcribed Spacer 2 diagnostic tool clarifies the taxonomic position and geographic distribution of the North American malaria vector Anopheles punctipennis.” MALARIA JOURNAL, 20(1), 11 pages. DOI: 10.1186/s12936-021-03676-4

Masri, R. A., Karagodin, D. A., Sharma, A., & Sharakhova, M. (2021). “A Gene-Based Method for Cytogenetic Mapping of Repeat-Rich Mosquito Genomes.” INSECTS, 12(2), 11 pages. DOI: 10.3390/insects12020138

Rafael, M. S., Bridi, L. C., Sharakhov, I., Marinotti, O., Sharakhova, M., Timoshevskiy, V., . . . Tadei, W. P. (2021). “Physical Mapping of the Anopheles (Nyssorhynchus) darlingi Genomic Scaffolds.” INSECTS, 12(2), 12 pages. DOI: 10.3390/insects12020164

Silverman RA, Ceci A, Cohen A, Helmick M, Short E, Bordwine P, Friedlander MJ, and Finkielstein CV. “Vaccine effectiveness during outbreak of COVID-19 Alpha variant (B.1.1.7) in men’s correctional facility, United States.” Emerg Infect Dis. 2022 July. https://doi.org/10.3201/eid2807.220091 Early release at http://wwwnc.cdc.gov/eid/article/28/7/22-0091_article.htm

Ternes D, Tsenkova M, Pozdeev VI, Meyers M, Koncina E, Atatri S, Schmitz M, Karta J, Schmoetten M, Heinken A, Rodriguez F, Delbrouck C, Gaigneaux A, Ginolhac A, Nguyen TTD^G, Grandmougin L, Frachet-Bour A, Martin-Gallausiaux C, Pacheco M, Neuberger-Castillo L, Miranda P, Zuegel N, Ferrand JY, Gantenbein M, Sauter T, Slade DJ, Thiele I, Meiser J, Haan S, Wilmes P, Letellier E. “The gut microbial metabolite formate exacerbates colorectal cancer progression.” Nat Metab. 2022 Apr;4(4):458-475. Epub 2022 Apr 18. PMID: 35437333; PMCID: PMC9046088. DOI: 10.1038/s42255-022-00558-0.

Queen J, Domingue JC, White JR, Stevens C, Udayasuryan B, Nguyen TTD^G, Wu S, Ding H, Fan H, McMann M, Corona A, Larman TC, Verbridge SS, Housseau F, Slade DJ, Drewes JL, Sears CL. “Comparative Analysis of Colon Cancer-Derived Fusobacterium nucleatum Subspecies: Inflammation and Colon Tumorigenesis in Murine Models.” mBio. 2022 Feb 8;13(1):e0299121. Epub ahead of print. PMID: 35130731; PMCID: PMC8822350. DOI: 10.1128/mbio.02991-21.

Shhadeh A, Galaski J, Alon-Maimon T, Fahoum J, Wiener R, Slade DJ, Mandelboim O, Bachrach G. “CEACAM1 Activation by CbpF-Expressing E. coli.” Front Cell Infect Microbiol. 2021 Jul 29;11:699015. PMID: 34395310; PMCID: PMC8358318. DOI: 10.3389/fcimb.2021.699015.

Galaski J, Shhadeh A, Umaña A^G, Yoo CC^G, Arpinati L, Isaacson B, Berhani O, Singer BB, Slade DJ, Bachrach G, Mandelboim O. “Fusobacterium nucleatum CbpF Mediates Inhibition of T Cell Function Through CEACAM1 Activation.” Front Cell Infect Microbiol. 2021 Jul 15;11:692544. PMID: 34336716; PMCID: PMC8319768. DOI: 10.3389/fcimb.2021.692544.

Valentino, H^G., Korasick, A.D., Bohac, T.J., Shapiro, J.A., Wencewicz, A.T., Tanner, J.J., and Sobrado, P. “Structural and Biochemical Characterization of the Flavin-Dependnt Sidrophore-Interacting Protein from Acinetobacter baumannii” (2021) ACS Omega 6(28):18537-18547. DOI: 10.1021/acsomega.1c03047

Valentino, H^G., and Sobrado, P. (2021) “Characterization of nitro-forming enzyme involved in fosfazinomycin biosynthesis.” Biochemistry. 60:2851-2864. DOI: 10.1021/acs.biochem.1c00512

Buri, E.S., V. R. Keesara, K.N. Loukika, V. Sridhar. 2022. “Spatio-temporal analysis of climatic variables in the Munneru River basin, India using NEX-GDDP data and the REA approach,” Sustainability 2022, 14, 1715. DOI: 10.3390/su14031715.

Kang^P, H., V. Sridhar^C, M. Mainuddin, L.D. Trung. 2021. “Impact of climate change on the drought and rice productivity of the Lower Mekong Basin,” Nature Scientific Reports, 11:9383, DOI: 10.1038/s41598-021-88405-2.

Loukika, K.N., V.R. Keesara, V. Sridhar. 2021. “Analysis of Land Use and Land Cover Using Machine Learning Algorithms on Google Earth Engine over the Munneru River Basin, India,” Sustainability, 2021, 13, 13758, DOI: 10.3390/su132413758.

Bejagam, V., V.R. Keesara, V. Sridhar. 2021. “Impacts of climate change on water provisional services in the Tungabhadra basin using InVEST model,” River Research and Applications, 37, 9, DOI: 10.1002/rra.389.

Ramabrahmam, K., V.R. Keesara, R. Srinivasan, D. Pratap, V. Sridhar. 2021. “Flow simulation and storage assessment in an ungauged irrigation tank cascade system using the SWAT model,” Sustainability, 13, 13158, DOI: 10.3390/su132313158.

Sridhar, V., S. A. Ali^G, D. J. Sample. 2021. “Systems analysis of coupled natural and human processes in the Mekong River Basin,” Hydrology, 8, 140, DOI: 10.3390/ hydrology8030140.

Whitehurst, D., Friedman B., Kochersberger K., Sridhar V., J. Weeks. 2021. “Drone-based community assessment, planning, and disaster risk management for sustainable development,” Remote Sensing, 13, 1739. DOI: 10.3390/rs13091739.

Satish Kumar, K., AnandRaj P, Sreelatha K., Sridhar V. 2021. “Regional analysis of drought severity-duration-frequency and severity-area-frequency patterns in the Godavari River Basin, India”, International Journal of Climatology, DOI: 10.1002/joc.7137.

Satish Kumar, K., AnandRaj P, Sreelatha K., Bisht D.S., Sridhar V. 2021. “Monthly and seasonal drought characterization using GRACE-based groundwater drought index and its link to teleconnections across South Indian river basins”, Climate 2021, 9, 56, DOI: 10.3390/cli9040056.

Sujatha, E.R., Sridhar V. 2021. “Landslide susceptibility analysis in the era of climate change: A logistic regression model case study in Coonoor, India”, Hydrology, 8(1), 41, DOI: 10.3390/hydrology8010041.

Satish Kumar, K., Venkata Ratnam E., Sridhar V. 2021. “Tracking seasonal fluctuations of drought indices with GRACE terrestrial water storage over major river basins in South India”, Science of the Total Environment, 763 DOI: 10.1016/j.scitotenv.2020.142994.

Kang^P, H., Sridhar V. 2021. “A novel approach combining simulated soil moisture and stochastic techniques to forecasting drought in the Mekong River basin,” International Journal of Climatology, 41, S1, E2497-E2516, DOI: 10.1002/joc.6860.

Kravitz A, Tyler R, Srianganthan N. “Novel Utilization and Restoration of Archived Ovine Formalin Fixed Paraffin-Embedded Tissues for Single Nucleotide Polymorphism Analysis” Frontiers

Nowak, E.S., Bansal, E., Baffoe-Bonnie, A.W., Sriranganathan N., Kerkering, T. K., and Rao, J (2021). “Biofilm Formation in Acinetobacter baumannii Clinical Isolates” Open Forum Infectious Diseases, Volume 8, Issue Supplement_1, November 2021, Page S595, DOI: 10.1093-ofid/ofab466.1203

Kravitz S¹, Tyler R¹, Murali Manohar² B., Ronald² B., Collins M³, Sriranganathan N.¹ “Successful Restoration of Archived Ovine Formalin Fixed Paraffin-Embedded Tissue DNA and Single Nucleotide Polymorphism Analysis” Vet Res Commun. 2022 May 26. DOI: 10.1007/s11259-022-09937-0. Online ahead of print

Bartholomew HP^G, Reynoso G^G, Thomas BJ^U, Mullins CM^U, Smith C^U/G, Gentzel IN, Giese LA, Mackey D, Stevens AM. “The Transcription Factor Lrp of Pantoea stewartii subsp. stewartii Controls Capsule Production, Motility, and Virulence Important for in planta Growth.” Front Microbiol. 2022 Feb 14;12:806504 PMID: 35237242; PMCID: PMC8882988. DOI: 10.3389/fmicb.2021.806504..

Serrao, SR.^G and Täuber UC. 2021. “Stabilizing spiral structures and population diversity in the asymmetric May-Leonard model through immigration.” European Physical Journal B, 94(8): 175, 1 – 15 (24 August 2021). Figures featured on issue cover DOI: 10.1140/epjb/s10051-021-00168-x

Nandi, R^G, Täuber UC, and Priyanka^P. 2021. “Dynein-inspired multilane exclusion process with open boundary conditions”. Entropy, 23(10): 1343, 1 – 13 (14 October 2021). Figures featured on journal's main homepage. https://arxiv.org/abs/arXiv:2108.13608; DOI: 10.3390/e23101343

Dong, S., Ye, Z., Tikhe, C. V., Tu, Z. J., Zwiebel, L. J., & Dimopoulos, G. (2021). “Pleiotropic Odorant-Binding Proteins Promote Aedes aegypti Reproduction and Flavivirus Transmission.” MBIO, 12(5), 18 pages. DOI: 10.1128/mBio.02531-21

Lyu, P., Qi, Y., Tu, Z. J., & Jiang, H. (2021). “Single-cell RNA Sequencing Reveals Heterogeneity of Cultured Bovine Satellite Cells.” FRONTIERS IN GENETICS, 12, 8 pages. DOI: 10.3389/fgene.2021.742077

Zhuo, J. C., Zhang, H. H., Hu, Q. L., Zhang, J. L., Lu, J. B., Li, H. -J., . . . Tu, Z. Zhang, C. -X. (2021). A feminizing switch in a hemimetabolous insect. SCIENCE ADVANCES, 7(48), 13 pages. DOI: 10.1126/sciadv.abf9237

Lukyanchikova, V., Nuriddinov, M., Belokopytova, P. et al. Anopheles mosquitoes reveal new principles of 3D genome organization in insects. Nat Commun 13, 1960 (2022). DOI: 10.1038/s41467-022-29599-5.

Kojin, B., Compton A.^P, Adelman, Z. Tu, Z. “Selective Targeting of Biting Females to Control Mosquito-Borne Infectious Diseases.” Trends in Parasitology, 2022, in press. DOI: 10.1016/j.pt.2022.05.012

Compton, A^P and Tu, Z. “Natural and engineered sex ratio distortion in insects.” Frontiers in Ecology and Evolution, 2022, in press. DOI: 10.3389/fevo.2022.884159

Huang^G, Q.L. and Vikesland P.J. 2022. “In-situ pH measurement of water droplets using flash-freeze SERS.” Environmental Science and Technology Letters 9: 459-465. DOI: 10.1021/acs.estlett.2c00181

Divyapriya^P, G.; A. Rahman^G; W. Leng; and P.J. Vikesland. 2022 “One-step biosynthesis of bilayered graphene oxide embedded bacterial nanocellulose hydrogel for versatile photothermal membrane applications.” Environmental Science: Nano 9: 1639-1650. DOI: 10.1039/D1EN00754H

Garg^G, A.; P.J. Vikesland; and W. Zhou. 2022. “Microporous multiresonant plasmonic meshes by hierarchical micro-nanoimprinting for biointerfaced SERS imaging and nonlinear nano-optics” Small 18: 2106887. DOI: 10.1002/smll.202106887

Rahman^G, A.; S. Kang^G; S. McGinnis; and P.J. Vikesland. 2022. “Life cycle impact assessment of iron oxide (Fe₃O₄/γ-Fe₂O₃) nanoparticle synthesis routes.” ACS Sustainable Chemistry and Engineering 10:3155-3165. DOI: 10.1021/acssuschemeng.1c05763

Huang^G, Q. and P.J. Vikesland. 2022. “Low-temperature Raman imaging of component distribution in micron-size droplets.” ACS Earth and Space Chemistry 6, 239-248. DOI: 10.1021/acsearthspacechem.1c00412

Rahman^G, A.; W. Wang^G; S. Kang^G; Q. Huang^G; I. Kim; and P.J. Vikesland. 2022. “Lectin-modified bacterial cellulose nanocrystals decorated with Au nanoparticles for selective detection of bacteria using SERS coupled with machine learning.” ACS Applied Nanomaterials 5: 259-268. DOI: 10.1021/acsanm.1c02760 CeZAP

Huang^G, Q.; W. Wang^G; and P.J. Vikesland. 2021. “Implications of the coffee-ring effect on virus infectivity.” Langmuir 37: 11260-11268. DOI: 10.1021/acs.langmuir.1c01610 CeZAP

Arango-Argoty^G, G.; L.S. Heath; A. Pruden; P.J. Vikesland; and L. Zhang. 2021. “MetaMLP: A fast word embedding based classifier to profile target gene databases in metagenomic samples.” Journal of Computational Biology 28. DOI: 10.1089/cmb.2021.0273 CeZAP,

Rahma, A.; Kang S.; Wang W.; Garg A.; Maile-Moskowitz A.; and Vikesland P.J. 2021. “Nanobiotechnology enabled approaches for wastewater based epidemiology.” Trends in Analytical Chemistry (TrAC). 143: 116400. CeZAP, DOI: 10.1016/j.trac.2021.116400.

Gupta^G S.; D.S. Aga; Pruden,A.; Zhang L.; and Vikesland P.J.. 2021. “Data analytics for environmental science and engineering research.” Environmental Science and Technology 55: 10895–10907. DOI: 10.1021/acs.est.1c01026. CeZAP

Kang^G S.; Kim I.; Vikesland P.J. 2021. “Discriminatory detection of ssDNA by surface-enhanced Raman spectroscopy (SERS) and tree-based support vector machine (Tr-SVM)” Analytical Chemistry 93: 9319-9328. DOI: 10.1021/acs.analchem.0c04576 CeZAP,

Kang^G S.; Nam^G W.; Zhou, W. Kim, I.; Vikesland P.J. 2021. “Universal pH sensing using top-down nanostructured surface-enhanced Raman scattering (SERS) substrates and multivariate regression”. ACS Applied Nanomaterials 4:5678-5777. DOI: 10.1021/acsanm.1c00549

Wang^G, W.; S. Kang^G; Vikesland. P.J. 2021. “Surface enhanced Raman spectroscopy (SERS) of bacterial metabolites for bacterial growth monitoring and diagnosis of viral infection.” Environmental Science and Technology 55: 9119-9128. DOI: 10.1021/acs.est.1c02552 CeZAP

Johnson MA^G, Liu H, Bush E, Sharma P^G, Yang S^G, Mazloom R^G, Heath LS, Nita M, Li S, Vinatzer BA (in press) “Investigating plant disease outbreaks with long-read metagenomics: sensitive detection and strain-level identification of Xylella fastidiosa.” Microbial Genomics.

Sharma P^G, Johnson MA^G, Mazloom R^G, Allen C, Heath LA, Lowe-Power TM, Vinatzer BA (2022) “Meta-analysis of the Ralstonia solanacearum species complex (RSSC) based on comparative evolutionary genomics and reverse ecology.” Microbial Genomics 8(3). DOI: 10.1099/mgen.0.000791

Yang S^G, Johnson MA^G, Hansen MA, Bush E, Li S, Vinatzer BA (2022) “Metagenomic sequencing for detection and identification of the boxwood blight pathogen Calonectria pseudonaviculata.” Scientific Reports 12:1399. DOI: 10.1038/s41598-022-05381-x

Yang S^G, Coleman J, Vinatzer BA (2022) “Genome Resource: Draft genome of Fusarium avenaceum, F156N33, isolated from the atmosphere above Virginia and annotated based on RNA sequencing data.” Plant Disease. DOI: 10.1094/PDIS-04-21-0787-A

Failor KC^G, Liu H, Mechan Llontop ME^G, LeBlanc S, Eckshtain-Levi N, Sharma P^G, Reed A^U, Yang S^G, Tian L^G, Lefevre C, Menguy N, Du L, Monteil CL, Vinatzer BA (2022) “Ice nucleation in a Gram-positive bacterium isolated from precipitation depends on a polyketide synthase and non-ribosomal peptide synthetase.” The ISME Journal. DOI: 10.1038/s41396-021-01140-4

Yang S^G, Vinatzer BA (2021) “Draft Genome Sequence of Mortierella alpina Strain LL118, Isolated from an Aspen (Populus tremuloides) Leaf Litter Sample.” Microbiology Resource Announcements. DOI: 10.1128/MRA.00864-21

Wangrawa, W.D., Ochomo, E., Upshur^G, F., Nicolas, Z., Borovsky, D., Lahondère, C., Vinauger, C., Athanase, B. and Antoine, S., 2022. “Essential oils and their binary combinations have synergistic and antagonistic insecticidal properties against Anopheles gambiae sl (Diptera: culicidae).” Biocatalysis and Agricultural Biotechnology, p.102347. DOI: 10.1016/j.bcab.2022.102347

Kang L., He G.^P, Sharp A. K., Wang X., Brown A. M., Michalak P.*, and Weger-Lucarelli J*. (2021) “A selective sweep in the Spike gene has driven SARS-CoV-2 human adaptation”. Cell 184: 1-9. DOI: 10.1016/j.cell.2021.07.007

Liu, J. L., Zabetakis, D., Gardner, C. L., Burke, C. W., Glass, P. J., Webb, E. M.^G, Shriver-Lake, L. C., Anderson, G. P., Weger-Lucarelli, J., and Goldman, E. R. (2022). “Bivalent single domain antibody constructs for effective neutralization of Venezuelan equine encephalitis,” Scientific reports, 12(1), 700. DOI: 10.1038/s41598-021-04434-x

Murrieta, R. A., Garcia-Luna, S. M., Murrieta, D. J., Halladay, G., Young, M. C., Fauver, J. R., Gendernalik, A., Weger-Lucarelli, J., Rückert, C., and Ebel, G. D. (2021). “Impact of extrinsic incubation temperature on natural selection during Zika virus infection of Aedes aegypti and Aedes albopictus,” PLoS pathogens, 17(11), e1009433. DOI: 10.1371/journal.ppat.1009433

Roesch, F., Cereghino, C.^U, Carrau, L., Hardy, A., Ribeiro-Filho, H., Lacritick, A. H., Koh, C., Marano, J.^G, Bates, T.^G, Rai, P.^G, Chuong, C.^G, Akter, S., Vallet, T., Blanc, H., Elliot, T., Brown, A. M., Michalak, P., LeRoith, T., Bloom, J., Marques, R. E., Saleh, M.-C., Vignuzzi, M., and Weger-Lucarelli, J. (2022). “The E2 glycoprotein holds key residues for Mayaro virus adaptation to the urban Aedes aegypti mosquito,” bioRxiv. DOI: 10.1101/2022.04.05.487100

Avila-Calderón ED, Ruiz-Palma MDS, Aguilera-Arreola MG, Velázquez-Guadarrama N, Ruiz EA, Gomez-Lunar Z, Witonsky S, Contreras-Rodríguez. “A Outer Membrane Vesicles of Gram-Negative Bacteria: An Outlook on Biogenesis.” Front Microbiol. 2021 Mar 4; 12:557902. eCollection 2021.PMID: 33746909 DOI: 10.3389/fmicb.2021.557902

Leeth C, Adkins J, Hay A, Bogers S, Potter A, Witonsky S, Zhu J. “Engrafting Horse Immune Cells into Mouse Hosts for the Study of the Acute Equine Immune Responses” J.Animals (Basel). 2021 Oct 14;11(10):2962 PMID: 34679981. DOI: 10.3390/ani11102962.

Dye KJ^G, Vogelaar NJ, Sobrado, P, and Yang Z. “A high throughput screen for inhibitors of the type IV pilus assembly ATPase PilB.” mSphere 6 (2): e00129-21. 2021. DOI: 10.1128/mSphere.00129-21

Dye KJ^G, Yang Z. “Analysis of Myxococcus xanthus Vegetative Biofilms With Microtiter Plates.” Front Microbiol. 2022 Apr 29;13:894562. DOI: 10.3389/fmicb.2022.894562

Nyblade^GC, ParrenoV, ZhouP, Hensley^GC, OakesV, MahsoubHM, Kiley^UK, Frazier^U M, Frazier^U A, Zhang Y, FengH, and YuanL. 2022. “Establishment of a gnotobiotic pig model of Clostridioides difficile infection and disease.” Gut Pathogens (accepted May 11, 2022) DOI: 10.1186/s13099-022-00496-y

Kocher^G, J., Castellucci,^G T.B., Wen^G, K., Li^P, G., Yang^G, X., Lei^G, S., Jiang, X., and L. Yuan*. “Simvastatin reduces protection and intestinal T cell responses induced by a norovirus P particle vaccine in gnotobiotic pigs.” Pathogens. 2021; 10(7):829. PMC8308729. DOI: 10.3390/pathogens10070829.

Hensley^G, C., Zhou, P., Schnur^U, S., Mahsoub, H.M., Liang^P, Y., Wang, M.X., Page, C., Yuan*, L., and V. Bronshtein*. 2021. “Thermostable, dissolvable buccal film rotavirus vaccine is highly effective in neonatal gnotobiotic pig challenge model.” Vaccines (Basel) 2021, 9(5) 437. DOI: 10.3390/vaccines9050437. PMC8147248. (*corresponding authors)

Ahmed S, Travis SD, Díaz-Bahamonde FV, Porter DDL, Henry SN, Ravipati A, Booker A, Ju J, Ding H, Ramesh AK, Pickrell AM, Wang M, LaConte S, Howell BR, Yuan L, and P.D. Morton. 2021. “Early influences of microbiota on white matter development in germ-free piglets.” Front. Cell. Neurosci.15:807170. DOI: 10.3389/fncel.2021.807170.

Zambrana, L.E., Weber, A.M., Borresen, E.C., Zarei, I., Perez, J., Perez, C., Rodríguez, I., Becker-Dreps, S., Yuan, L., Vilchez S, and E.P. Ryan. 2021. “Daily rice bran consumption for six months influences serum glucagon-like peptide-2 and metabolite profiles without differences in trace elements and heavy metals in weaning Nicaraguan infants at 12 months of age.” Current Developments in Nutrition, nzab101. PMC8421236 DOI: 10.1093/cdn/nzab101. .

Tian Wu^P, Rui Zou, Dian Pu, Zengquan L, Zhao B. (2021). “Non-targeted and targeted metabolomics profiling of tea plants (Camellia sinensis) in response to its intercropping with Chinese chestnut.” BMC Plant Biol. 21(1):55. DOI: 10.1186/s12870-021-02841-w

Yan, H.^G, Lee, J., Song, Q., Li^G, Q., Schiefelbein, J., Zhao, B. and Li, S. (2022), “Identification of new marker genes from plant single-cell RNA-seq data using interpretable machine learning methods.” New Phytol, 234: 1507-1520. DOI: 10.1111/nph.18053

Zhu, J. 2022. “Non-genomic action of juvenile hormone modulates the synthesis of 20-hydroxyecdysone in Drosophila.” Science Bulletin. 67(2):117-118. DOI: 10.1016/j.scib.2021.08.007

2020-21 Publications

Sanderson, C. E., Jori, F., Moolla, N., Paweska, J. T., Oumer, N., & Alexander, K. A. Rift Valley fever circulation in wildlife in Botswana. Frontiers in Veterinary Science. Submitted.

Sanderson, C. E., Jori, F., Moolla, N., Paweska, J. T., Oumer, N., & Alexander, K. A. (2020). Silent Circulation of Rift Valley Fever in Humans, Botswana, 2013–2014. Emerging Infectious Diseases, 26(10), 2453.

Laver, P. N., Ganswindt, A., Ganswindt, S. B., & Alexander, K. A. (2020). Effect of food limitation and reproductive activity on fecal glucocorticoid metabolite levels in banded mongooses. BMC ecology, 20(1), 1-24.

Sanderson, C. E., & Alexander, K. A. (2020). Unchartered waters: Climate change likely to intensify infectious disease outbreaks causing mass mortality events in marine mammals. Global Change Biology, 26(8), 4284-4301.

Verble, K., Hallerman, E.M., and Alexander, K.A. Urban landscapes increase dispersal, gene flow, and pathogen transmission potential in banded mongoose (Mungos mungo) in northern Botswana. Ecology and Evolution. Accepted.

Brock, R.M., Beitel-White,N., Coutermarsh-Ott, S., Grider, D.J., Lorenzo, M.F., Ringel-Scaia, V.M., Manuchehrabadi, N., Martin, R.C.G., Davalos, R.N., Allen, I.C. (2020). Patient derived xenografts expand human primary pancreatic tumor tissue availability for ex vivo ablation testing. Frontiers in Oncology. May 22;10:843. eCollection 2020. PMID: 32528898. IF: 4.137.

Beitel-White, N., Lorenzo, M.F., Zhao, Y., Brock, R.M., Coutermarsh-Ott, S., Allen, I.C., Manuchehrabadi, N., Davalos, R.V. (2020). Multi-tissue Analysis on the Impact of Electroporation on Electrical and Thermal Properties. IEEE Transactions on Biomedical Engineering. Aug 3;PP. PMID: 32746081. IF: 4.780

Nagai-Singer, M.A., Hendricks-Wenger, A., Brock, R.M., Morrison, H.A., Tupik, J.D., Allen, I.C. (2020). Machine versus Mortal: How to use computer-based image analysis to improve quantification of metastatic burden in 4T1 breast cancer model. Journal of Visualized Experiments. Oct 2;(164). PMID: 33074250. IF: 1.108.

Dillon, K., Powell, C., Morrison, H., Carrazzone, R., Ringel-Scaia, V., Winckler, E., Council-Troche, R., Allen, I.C.*, Matson, J*. (2021) Tissue-specific persulfide delivery to the gut: Effects on the microbiome. Angewandte Chemie. Mar 8;60(11):6061-6067. PMID: 33511734. *Authors Contributed Equally. IF: 12.959.

Soares, J., Braun, C., Machado, M., Oliveira, R., Henao-Guerrero, N., Countermash-Ott, S., Allen, I.C., Grant, D., Giannella-Neto, A. (2021) Cardiovascular function, pulmonary gas exchange and tissue oxygenation in isoflurane-anesthetized Beagles mechanically ventilated for four hours with four different levels of positive end-expiratory pressure. Veterinary Anaesthesia and Analgesia. Feb 16:1467-2987(21)00027-1. PMID: 33741264. IF: 1.368

Hendricks-Wenger, A., Aycock, K.N., Nagai-Singer, M.A., Coutermarsh-Ott, S., Lorenzo, M.F., Gannon, J., Uh, K., Farrell, K., Beitel-White, N., Brock, R.M. Simon, A., Morrison, H.A., Tuohy, J., Clark-Deener, S., Vlaisavljevich, E., Davalos, R.N., Lee, K., Allen, I.C. (2021). Establishing a SCID-Like Porcine Model of Human Cancer for Novel Therapy Development: A Pilot Study with Pancreatic Adenocarcinoma and Irreversible Electroporation. Scientific Reports. (In Press). IF: 3.998.

Hendricks, A., Weber, P., Simon, A., Saunier, S., Coutermarsh-Ott, S., Grider, D., Jove, J.V., Allen, I.C., Luyimbazi,D., Vlaisavljevich, E. Histotripsy for the Treatment of Cholangiocarcinoma Liver Tumors: In Vivo Feasibility and Ex Vivo Dosimetry Study. IEEE Ultrasonics, Ferroelectrics, and Frequency Control (In Press). IF: 2.989

Hendricks, A., Sereno, J., Gannon, J., Zeher, A., Brock, R., Betiel-White, N., Simon, A., Davalos, R., Coutermarsh-Ott, S., Vlaisavljevich, E., Allen, I.C. Histotripsy is an Effective Non-Thermal Ablation Strategy for Pancreatic Cancer that Stimulates the Innate Immune System and Modulates Anti-Tumor Immunity. IEEE Ultrasonics, Ferroelectrics, and Frequency Control (In Press). IF: 2.989

Nguyen, V.Q., Eden, K.B., Morrison, H.A., Sammons, M.B., Knight, K., Sorrentino, S., Brock, R.M., Grider, D.J., Allen, I.C.*, Dorrentino, D.* Noncanonical NF-κB signaling upregulation in inflammatory bowel disease patients is associated with loss of response to anti-TNF agents. Frontiers in Pharmacology. (In Press 5/20/21) *Co-Corresponding Author. IF: 4.400

Tupik, J.D., Nagai-Singer, M.A., Allen, I.C. (2020). To Protect or Adversely Affect? The Dichotomous Role of the NLRP1 Inflammasome in Human Disease. Molecular Aspects of Medicine. Apr 28:100858. PMID: 32359693. IF: 10.238. Invited Review.

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Zec S., C. Hadfield, L. Hungerford. 2021. Retrospective review of copper sulfate immersion treatment in marine teleosts during quarantine at the National Aquarium of Baltimore from 2004 to 2016. J Zoo Wildlf Med. 52: 97-102.

Witte^G, C., J.H. Fowler, W. Pfeiffer, L. Hungerford, J. Braun, J. Burchell, R. Papendick, B. Rideout. 2021. Social network analysis and whole-genome sequencing to evaluate disease transmission in a large, dynamic population: a study of avian mycobacteriosis in zoo birds. PLoS One 16: e0252152.

Prince, B.C.,^G L. Juran, V. Sridhar, A. Bukvic, M.C. MacDonald (2021). A statistical and spatial analysis of water poverty using a modified Water Poverty Index. International Journal of Water Resources Development 37(2): 339-356.

Scott, V.,^G L. Juran, E.J. Ling, B. Benham, A. Spiller (2020). Assessing strontium and vulnerability to strontium in private drinking water systems in Virginia . Water 12(4): doi:10.3390/w12041053.

Aksha, S.K.,^G L.M. Resler, L. Juran, L.W. Carstensen (2020). A geospatial analysis of multi-hazard risk in Dharan, Nepal. Geomatics, Natural Hazards & Risk 11(1): 88-111.

Read, D.C., Fisher, P.J., L. Juran (2020). How do women maximize the value of mentorship? Insights from mentees, mentors, and industry professionals. Leadership & Organization Development Journal 41(2): 165-175.

JR Bobe, BL Jutras, L Horn, ME Embers, A Bailey,R Moritz, Y Zhang, Mark J Soloski, R Ostfeld, RT Marconi, J Aucott, A Ma'Ayan, F Keesing, K Lewis, CB Mamoun, A Rebman, ME McClune^G, EB Breitschwerdt, J Panga, R Maggi, F Yang, B Nemser, A Ozcan, O Garner, DD Carlo, Z Ballard, H Joung, A Garcia-Romeu,RR Griffiths, N. Baumgarth. Recent progress in Lyme disease and remaining challenges. Frontiers in Medicine- In Press

MM Davis^G, AM Brock^G, TG DeHart^G, BP Boribong, K Lee, ME McClune^G, Y Chang, N Cramer^U, J Liu, C Jones, and BL Jutras. 2021. The peptidoglycan-associated protein NapA plays an important role in the envelope integrity and in the pathogenesis of the Lyme Disease Spirochete. PLoS Pathog. 17(5):e1009546.

Dahal B^G, Lehman CW^G, Akhrymuk I, Bracci NR^G, Panny L^G,Barrera MD^G, Bhalla N, Jacobs JL, Dinman JD, Kehn-Hall K. 2021. PERK is Critical for Alphavirus Nonstructural Protein Translation. Viruses. 13(5), 892; https://doi.org/10.3390/v13050892

Azouz NP, Klingler AM, Callahan V^G, Akhrymuk IV, Elez K, Raich L, Henry BM, Benoit JL, Benoit SW, Noé F, Kehn-Hall K, Rothenberg ME. Alpha 1 Antitrypsin is an Inhibitor of the SARS-CoV-2-Priming Protease TMPRSS2. 2021. Pathog Immun. 6(1):55-74. doi: 10.20411/pai.v6i1.408. eCollection 2021. PMID: 33969249

Lin SC, Lehman C^G, Stewart AK, Panny L^G, Bracci N^G, Wright JLC, Paige M, Strangman WK, Kehn-Hall K. 2021. Homoseongomycin, a compound isolated from marine actinomycete bacteria K3-1, is a potent inhibitor of encephalitic alphaviruses. Antiviral Res. 6:105087. doi: 10.1016/j.antiviral.2021.105087.PMID: 33965437

Chang C, Lin SM, Satange R, Lin SC, Sun SC, Wu HY, Kehn-Hall K, Hou MH. Targeting protein-protein interaction interfaces in COVID-19 drug discovery. 2021. Computational and Structural Biotechnology Journal. 19, 2246-2255. doi.org/10.1016/j.csbj.2021.04.003. PMID: 33936565

Barrera, MD^G, Callahan V^G, Akhrymuk I, Bhalla N, Zhou W, Campbell C, Narayanan A, Kehn-Hall K. 2021. Proteomic Discovery of VEEV E2-Host Partner Interactions Identifies GRP78 Inhibitor HA15 as a Potential Therapeutic for Alphavirus Infections. Pathogens. 10(3):283. doi: 10.3390/pathogens10030283. PMID: 33801554

Lehman CW^G, Kehn-Hall K, Aggarwal M, Bracci NR^G, Pan HC, Panny L^G, Lamb RA, Lin SC. Resveratrol Inhibits Venezuelan Equine Encephalitis Virus Infection by Interfering with the AKT/GSK Pathway. 2021. Plants (Basel). 10(2):346. doi: 10.3390/plants10020346. PMID: 33673026

He S, Waheed AA, Hetrick B, Dabbagh D, Akhrymuk IV, Kehn-Hall K, Freed EO, Wu Y. 2020. PSGL-1 Inhibits the Incorporation of SARS-CoV and SARS-CoV-2 Spike Glycoproteins into Pseudovirions and Impairs Pseudovirus Attachment and Infectivity. Viruses. 13(1):E46. doi: 10.3390/v13010046. PMID: 33396594.

Barclay RA, Akhrymuk I, Patnaik A, Callahan V^G, Lehman C^G, Andersen P, Barbero R, Barksdale S, Dunlap R, Goldfarb D, Jones-Roe T, Kelly R, Kim B, Miao S, Munns A, Munns D, Patel S, Porter E, Ramsey R, Sahoo S, Swahn O, Warsh J, Kehn-Hall K, Lepene B. 2020. Hydrogel particles improve detection of SARS-CoV-2 RNA from multiple sample types. Sci Rep. 10(1):22425. doi: 10.1038/s41598-020-78771-8. PMID: 33380736,

Bracci N^G, Pan H, Lehman C^G, Kehn-Hall K, Lin S. 2020. Improved plaque assay for human coronaviruses 229E and OC43. PeerJ. 8:e10639 https://doi.org/10.7717/peerj.10639, PMID: 33391888

Chowdhury AS, Reehl SM, Kehn-Hall K, Bishop B, Webb-Robertson BM. 2020. Better understanding and prediction of antiviral peptides through primary and secondary structure feature importance. Sci Rep. 10(1):19260. doi: 10.1038/s41598-020-76161-8. PMID: 33159146,

Malani, A. N., Kauffman, C. A., Latham, R., Peglow, S., Ledtke, C. S., Kerkering, T. M., Kaufman, D. H., Triplett, P. F., Wright, P. W., Bloch, K. C., McCotter, O., Toda, M., Jackson, B. R., Pappas, P. G., & Chiller, T. M. (2020). Long-term Outcomes of Patients With Fungal Infections Associated With Contaminated Methylprednisolone Injections. Open forum infectious diseases, 7(6), ofaa164. https://doi.org/10.1093/ofid/ofaa164

Adenikinju, A., Jensen, R. V., Kerkering, T. M., Garner, D. C., & Rao, J. (2020). Complete Genome Sequence of Pseudomonas aeruginosa CMC-115, a Clinical Strain from an Acute Ventilator-Associated Pneumonia Patient. Microbiology resource announcements, 9(30), e00595-20. https://doi.org/10.1128/MRA.00595-20

Ding^G, S., K.R. Fike, M. Klemba, and P.R. Carlier. 2020. In vitro and in vivo evaluation of the antimalarial MMV665831 and structural analogs. Bioorganic & Medicinal Chemistry Letters 30: 127348.

Marston M^G; Kolivras K. (2021). Identifying surface mine extent across Central Appalachia using time series analysis, 1984-2015. International Journal of Applied Geospatial Research.

Bhattarai S^G; Kolivras K; Ghimire K; Shao Y. (2020). Understanding the relationship between land use and land cover and malaria in Nepal. Geospatial Health, 15(2). doi:10.4081/gh.2020.855

Buttling L^G; McKnight M^G; Kolivras K; Ranganathan S; Gohlke J. (2021). Maternal proximity to Central Appalachian surface mining and birth outcomes. Environmental Epidemiology, 5(1), e128. doi:10.1097/EE9.0000000000000128

Govenor^G, H., C. Hession, T. Keys, N. Jones, R. Stewart, L. Krometis. (accepted, in press Jan 2021) Evaluating rare earth elements as tracers of fluvial processes: Fine sediment transport and and deposition in a small stream. Transactions of the ASABE.

DeVilbiss^G, S., M. Steele, L. Krometis, B. Badgley. 2021. Freshwater salinization increases survival of Escherichia coli and risk of bacterial impairment. Water Research. 191: 116812 .

Wind^G, L., L. Krometis, C. Hession, A. Pruden. 2021. Cross-comparison of methods for quantifying antibiotic resistance in agricultural soils amended with dairy manure and compost. Science of the Total Environment. 766: 144321.

Maxcy-Brown, J., M. A. Elliott, L. Krometis, K. D. White, J. Brown, U. Lall. 2021. Right in Our Backyard: Untreated Wastewater Discharges from Rural Homes in the United States. Water Research. 190: 116647.

Angemeier, P., L. Krometis, M. Stern, T. Hemby. 2021. Exploring relationships among stream health, human well-being, and demographics in Virginia. Ecological Indicators 121: 107194.

Patton^G, H., L. Krometis, E. Sarver. 2020. Springing for safe water: Drinking water quality and source selection in Central Appalachian communities Water. 12(3), 888; https://doi.org/10.3390/w12030888

Marcillo^G, C., G. Garcia Prado, N. N. Copeland, L. Krometis. 2020. Drinking water quality and consumer perceptions of contamination at the point-of-use in San Rafael Las Flores, Guatemala. Water Practice and Technology 15 (2): 374–385 https://doi.org/10.2166/wpt.2020.025

He Y, Huhn DD, O’Keefe S, Ogejo J, Fraguas C, Wang H, Huang H. Protein production from brewer’s spent grain via wet fractionation: process optimization and techno-economic analysis Food Bioprod. Process 126: 234-244

Scoles GA, Lohmeyer KH, Ueti MW, Bonilla D, Lahmers KK, Piccione J, Rogovskyy AS. Stray Mexico origin cattle captured crossing into Southern Texas carry Babesia bovis and other tick-borne pathogens. Ticks Tick-Borne Diseases. Online March 17, 2021. In press.

Dinkel KD, Herndon DR, Noh SM, Lahmers KK, Todd SM, Ueti MW, Scoles GA, Mason, KL, Fry LM. A U.S. isolate of Theileria orientalis, Ikeda genotype, is transmitted to cattle by the invasive Asian longhorned tick, Haemaphysalis longicornis. Parasit Vectors. 2021 Mar 16;14(1):157. doi:10.1186/s13071-021-04659-9. PMID: 33726815; PMCID: PMC7962341.

Goodman L, Lahmers K. Special issue on applied next-generation sequencing in veterinary diagnostic laboratories. J Vet Diagn Invest. 2021 Mar;33(2):177-178. doi: 10.1177/1040638721995676. PMID: 33685332; PMCID: PMC7953093.

Young KT, Lahmers KK, Sellers HS, Stallknecht DE, Poulson RL, Saliki JT, Tompkins SM, Padykula I, Siepker C, Howerth EW, Todd M, Stanton JB. Randomly primed, strand-switching, MinION-based sequencing for the detection and characterization of cultured RNA viruses. J Vet Diagn Invest. 2021Mar;33(2):202-215. doi: 10.1177/1040638720981019. Epub 2020 Dec 24. PMID: 33357075; PMCID: PMC7953086.

Young KT, Lahmers KK, Sellers HS, Stallknecht DE, Poulson RL, Saliki JT, Tompkins SM, Padykula I, Siepker C, Howerth EW, Todd M, Stanton JB. Randomly primed, strand-switching, MinION-based sequencing for the detection and characterization of cultured RNA viruses. J Vet Diagn Invest. 2020 Dec 24:1040638720981019. doi: 10.1177/1040638720981019. Epub ahead of print. PMID:33357075.

Petruzzi B, Dickerman A, Lahmers K, Scarratt WK, Inzana TJ. Polymicrobial Biofilm Interaction Between Histophilus somni and Pasteurella multocida. Front Microbiol. 2020 Jul 10;11:1561. doi:10.3389/fmicb.2020.01561. PMID: 32754136; PMCID: PMC7366659.

Thompson AT, White S, Shaw D, Egizi A, Lahmers K, Ruder MG, Yabsley MJ. Theileria orientalis Ikeda in host-seeking Haemaphysalis longicornis in Virginia, USA. Ticks and Tick-Borne Dis. 2020 Sep;11(5):101450. Doi: 10.1016/j.ttbdis.2020.101450. Epub 2020 May 22. PMID: 32723633.

Lazzari C.R., Fauquet A.^U, Lahondère C., Pereira M.H. and R. Araujo. (2021). Ticks perform evaporative cooling during blood-feeding. Journal of Insect Physiology, 130(104197).

Lahondère C. (2021). A step-by-step guide to mosquito electroantennography. JOVE. e62042.

Bates T.A.^G, Chuong C., Marano J.^G, Waldman A., Klinger A., Reinhold J.M.^G, Lahondère C. and J. Weger. (2021). American Aedes japonicus japonicus, Culex pipiens pipiens, and Culex restuans mosquitoes have limited transmission capacity for a recent isolate of Usutu virus. 555: 64-70. Virology.

Reinhold J.M.^G, Shaw R.^U and Lahondère C. (2021). Beat the heat: Culex quinquefasciatus regulates its body temperature during blood-feeding. 96: 102826. Journal of Thermal Biology.

Lahondère C. and Tu Z. (2020). Editorial overview: vectors and medical and veterinary entomology. Current Opinion in Insect Science.

Langwig, K.E., White, J.P., Parise, K.L., Kaarakka, H.M., Redell, J.A., DePue, J. Scullon, W.H., Foster, J.T. Kilpatrick, A.M., Hoyt, J.R. 2020. Mobility and infectiousness in the spatial spread of an emerging pathogen. Journal of Animal Ecology (IF = 4.46) . https://doi.org/10.1111/1365-2656.13439.

Hoyt, J.R., Kilpatrick, A.M., Langwig, K.E. Ecology and impacts of white-nose syndrome on bats. 2021. Nature Reviews Microbiology (IF = 34.209). doi:10.1038/s41579-020-00493-5.

Hopkins, S.R.^P, Hoyt, J.R., White, J.P, Kaarakka, H.M., Redell, J. A., DePue, J.E., Scullon, W.H., Kilpatrick, A.M. Langwig, K.E. 2021. Continued preference for suboptimal habitat reduces bat survival with white-nose syndrome. Nature Communications (IF = 12.121). 12: 1-9.

Gomes, M.G.M. Corder, R.M., King, J.G., Langwig, K.E., Souto-Maior, C., Carneiro, J., Gonçalves, G., Penha-Gonçalves, C., Ferreira, M. U., Aguas, R. Individual variation in susceptibility or exposure to SARS-CoV-2 lowers the herd immunity threshold. 2020. medRxiv preprint. doi: https://doi.org/10.1101/2020.04.27.20081893.

Kilpatrick, A.M., Hoyt, J.R., King, A., Kaarakka, H.M., Redell, J. A., White, J.P, Langwig, K.E. Impact of censusing and research on wildlife populations. Conservation Science and Practice (IF = NA). https://doi.org/10.1111/csp2.264.

Lazar, I.M.;* Gulakowski, N.S.;U Lazar, A.C., “Protein and Proteome Measurements with Microfluidic Chips,” Anal. Chem. 2020, 92, 1, 169-182. doi.org/10.1021/acs.analchem.9b04711.

Patel, P.A.; Liang, C.; Arora, A.; Vijayan, S.; Ahuja, S.; Wagley P.K.; Settlage, R.; LaConte, L.E.W.; Goodkin, H.P.; Lazar, I.M.; Srivastava, S.; Mukherjee, K.,* Haploinsufficiency of X-Linked Intellectual Disability Gene CASK Induces Post-transcriptional Changes in Synaptic and Cellular Metabolic Pathways. Experimental Neurology 2020, 329, Article 113319 doi.org/10.1016/j.expneurol.2020.113319.

Aguilera Flores, M.;G Lazar, I.M.,* “XMAn v2 - A Database of Homo sapiens Mutated Peptides,” Bioinformatics 2020, 36(4), 1311-1313 (published Sep. 6, 2019). doi: 10.1093/bioinformatics/btz693.

Villegas AM, Stabler L, Moore RJ, Uzal FA, Lacey JA, Hofacre C, Lee M, Ferguson-Noel N, Barber R, Rimet C-S. Focal duodenal necrosis in chickens: attempts to reproduce the disease experimentally and diagnostic considerations. Journal of Veterinary Diagnostic Investigation. 32:268-276; 2020.

Hutcheson AR, Thompson K, Maurer JJ, Ferguson N, Grogan K, Roney S, Seahorn H, Lobsinger C, Lee MD. Differentiating Vaccine-Related Fowl Cholera from Naturally Occurring Disease. Avian Diseases. 64:437-444; 2020.

Oluwadare M, Lee MD, Grim CJ, Lipp EK, Cheng Y, Maurer JJ. The Role of the Salmonella spvB IncF Plasmid and Its Resident Entry Exclusion Gene traS on Plasmid Exclusion. Frontiers in Microbiology. 11:949; 2020.

Pedroso AA, Lee MD, Maurer JJ. Strength Lies in Diversity: How Community Diversity Limits Salmonella Abundance in the Chicken Intestine. Frontiers in Microbiology. 12:1584; 2021.

Stewart JL, Brookhart ME, Clark SG, LeRoith T. 2020. Theriogenology Question of the Month. J Am Vet Med Assoc. Jul 1;257(1):45-47. doi: 10.2460/javma.257.1.45. PMID: 32538695

Zajac A, Fairman D, McGee E, Wells B, Peregrine A, Jenkins E, LeRoith T, St John B.J. 2020. Alveolar echinococcosis in a dog in the eastern United States. Vet Diagn Invest. Jul 25:1040638720943842. doi: 10.1177/1040638720943842. Online ahead of print. PMID: 32715926

Chuong C, Bates TA, Akter S, Werre SR, LeRoith T, Weger-Lucarelli J. 2020. Nutritional status impacts dengue virus infection in mice. BMC Biol. Aug 27;18(1):106. doi: 10.1186/s12915-020-00828-x. “PMID: 32854687

Tian D, Subramaniam S, Heffron CL, Mahsoub HM, Sooryanarain H, Wang B, Cao QM, Hassebroek A^**, LeRoith T, Foss DL, Calvert JG, Meng XJ. 2020. Construction and efficacy evaluation of novel swine leukocyte antigen (SLA) class I and class II allele-specific poly-T cell epitope vaccines against porcine reproductive and respiratory syndrome virus. J Gen Virol. Sep 7. doi: 10.1099/jgv.0.001492. Online ahead of print. PMID: 32894211

Bishal Tamang, Song Li, Dhivyaa Rajasundaram#, Suman Lamichhane, and Takeshi Fukao*. (2021) Overlapping and stress-specific transcriptomic and hormonal responses to flooding and drought in soybean. The Plant Journal. Accepted.

Kshitiz Dhakal#, Qian Zhu#, Bo Zhang, Mao Li*, and Song Li*. (2021) Analysis of Shoot Architecture Traits in Edamame Reveals Potential Strategies to Improve Harvest Efficiency. Frontiers in Plant Science 12, 249.

Jiyoung Lee#, Shuo Geng, Song Li*, and Liwu Li*. (2021) Single cell RNA-seq and machine learning reveal novel subpopulations and regulatory sequences in low-grade inflammatory monocytes. Frontier in Immunology 12, 266.

Tianshu Xu, Harnaik Dhami, Song Li, Pratap Tokekar*. (2020) Autonomous crop height estimation and navigation using an unmanned ground vehicle in row-based farmlands. Autonomous Air and Ground Sensing Systems for Agricultural Optimization and Phenotyping V. 11414:114140I.

Harnaik Dhami, Kevin Yu, Tianshu Xu, Qian Zhu#, Kshitiz Dhakal#, James Friel#, Song Li, and Pratap Tokekar*. Crop Height and Plot Estimation for Phenotyping from Unmanned Aerial Vehicles using 3D LiDAR. 2020 IEEE/RSJ International Conference on Intelligent Robots and Systems (IROS). October 25-29, 2020, USA.

Lindsay C DeMers#, Neelam R Redekar#, Aardra Kachroo, Sue A Tolin, Song Li, and Saghai Maroof*. (2020) A transcriptional regulatory network of Rsv3-mediated extreme resistance against Soybean mosaic virus. PloS one 15 (4), e0231658

Leila Abdelhamid, Xavier Cabana-Puig, Brianna Swartwout, Jiyoung Lee#, Song Li, Sha Sun, Yaqi Li, A Catharine Ross, Thomas E Cecere, Tanya LeRoith, Stephen R Werre, Haifeng Wang, Christopher M Reilly, and Xin M Luo* (2020) Retinoic Acid Exerts Disease Stage-Dependent Effects on Pristane-Induced Lupus. Frontiers in immunology 11, 408

Marco Enrique Mechan Llontop, Parul Sharma, Marcela Aguilera Flores#, Shu Yang, Jill Pollok, Long Tian, Chengjie Huang, Steven Rideout, Lenwood S Heath, Song Li*, Boris Alexander Vinatzer*. (2019) Strain-level identification of bacterial tomato pathogens directly from metagenomic sequences. Phytopathology. 110(4) 768-779.

Qi Song#, Jiyoung Lee#, Shamima Akter#, Matthew Rogers#, Ruth Grene, Song Li*. Prediction of condition-specific regulatory genes using machine learning. Nucleic Acid Research. 2020. doi: 10.1093/nar/gkaa264

Haidong Yan#, Aureliano Bombarely, Song Li*, DeepTE: a computational method for de novo classification of transposons with convolutional neural network. Bioinformatics, btaa519. Published: 16 May 2020

Koch, A. A., Schmidt, J. J., Lowell, A. N., Hansen, D. A., Coburn, K. M., Chemler, J. A., & Sherman, D. H. (2020). Probing Selectivity and Creating Structural Diversity Through Hybrid Polyketide Synthases. Angewandte Chemie, 132(32), 13677-13682. doi:10.1002/ange.202004991

Hohlman, R. M., Newmister, S. A., Sanders, J. N., Khatri, Y., Li, S., Keramati, N. R., Lowell, A.N., Houk K.N., Sherman, D. H. (2021). Structural Diversification of Hapalindole and Fischerindole Natural Products via Cascade Biocatalysis. ACS CATALYSIS, 11(8), 4670-4681. doi:10.1021/acscatal.0c05656

Kalkreuter, E., Bingham, K. S., Keeler, A. M., Lowell, A. N., Schmidt, J. J., Sherman, D. H., & Williams, G. J. (2021). Computationally-guided exchange of substrate selectivity motifs in a modular polyketide synthase acyltransferase. Nature Communications, 12(1), 12 pages. doi:10.1038/s41467-021-22497-2

Mu Q^P, Swartwout BK^G, Edwards MR^P, Zhu J^P, Lee G, Eden K, Cabana-Puig X^G, McDaniel DK, Mao J, Abdelhamid L^G, Brock RM, Allen IC, Reilly CM, Luo XM (2021) Regulation of neonatal IgA production of the maternal microbiota. Proceedings of the National Academy of Sciences 118 (9): e2015691118.

Mu Q^P, Edwards MR^P, Swartwout BK^G, Cabana-Puig X^G, Mao J, Zhu J^P, Grieco J, Cecere TE, Prakash M, Reilly CM, Puglisi C, Bachali P, Grammer AC, Lipsky PE, Luo XM (2020) Gut microbiota and bacterial DNA suppress autoimmunity by stimulating regulatory B cells in a murine model of lupus. Frontiers in Immunology 11:593353.

Abdelhamid L^G, Cabana-Puig X^G, Mu Q^P, Moarefian M, Swartwout B^G, Eden K, Das P, Seguin RP, Xu L, Lowen S, Lavani M, Hrubec TC, Jones CN, Luo XM (2020) Quaternary ammonium compound disinfectants reduce lupus-associated splenomegaly by targeting neutrophil migration and T-cell fate. Frontiers in Immunology 11:575179.

Abdelhamid L^G, Cabana-Puig X^G, Swartwout B^G, Lee J, Li S, Sun S, Li Y, Ross AC, Cecere TE, LeRoith T, Werre SR, Wang H, Reilly CM, Luo XM (2020) Retinoic acid exerts disease stage-dependent effects on pristane-induced lupus. Frontiers in Immunology 11:408.

Tang, J.W., L.C. Marr, Y. Li, S.J. Dancer. 2021. Covid-19 has redefined airborne transmission, BMJ, 373: n913, doi:10.1136/bmj.n913.

Pan^G, J., C. Harb^G, W. Leng, L.C. Marr. 2021. Inward and outward effectiveness of cloth masks, a surgical mask, and a face shield, Aerosol Science and Technology, 1-16, doi:10.1080/02786826.2021.1890687.

Patolia, H.H., J. Pan^G, C. Harb^G, L.C. Marr, A.W. Baffoe-Bonnie. 2021. Filtration evaluation and clinical use of expired elastomeric P-100 filter cartridges during the COVID-19 pandemic, Infection Control & Hospital Epidemiology, 42: 367-369, doi:10.1017/ice.2020.257.

Baffoe-Bonnie, A.W., K.S. Zhang, J. Pan^G, K. Simpkins, L.C. Marr. 2021. Filtration evaluation of expired elastomeric P-100 filter cartridges after months of real-world use during the coronavirus disease 2019 (COVID-19) pandemic, Infection Control & Hospital Epidemiology, 1-2, doi:10.1017/ice.2021.104.

Miller, S.L., W.W. Nazaroff, J.L. Jimenez, A. Boerstra, G. Buonanno, S.J. Dancer, J. Kurnitski, L.C. Marr, L. Morawska, C. Noakes. 2021. Transmission of SARS-CoV-2 by inhalation of respiratory aerosol in the Skagit Valley Chorale superspreading event, Indoor Air, 31: 314-323, doi:10.1111/ina.12751.

Jatta, M., C. Kiefer, H. Patolia, J. Pan^G, C. Harb^G, L.C. Marr, A. Baffoe-Bonnie. 2021. N95 reprocessing by low temperature sterilization with 59% vaporized hydrogen peroxide during the 2020 COVID-19 pandemic, American Journal of Infection Control, 49: 8-14, doi:10.1016/j.ajic.2020.06.194.

Lin^G, K., C.R. Schulte, L.C. Marr. 2020. Survival of MS2 and Φ6 viruses in droplets as a function of relative humidity, pH, and salt, protein, and surfactant concentrations, PLoS One, 15, e0243505, doi:10.1371/journal.pone.0243505.

Prather, K.A., L.C. Marr, R.T. Schooley, M.A. McDiarmid, M.E. Wilson, D.K. Milton. 2020. Airborne transmission of SARS-CoV-2, Science, eabf0521, doi:10.1126/science.a521.

Allen, J.G., L.C. Marr. 2020. Recognizing and controlling airborne transmission of SARS‐CoV‐2 in indoor environments, Indoor Air, 30, 557-558, doi:10.1111/ina.12697.

Morawska, L., J.W. Tang, W. Bahnfleth, P.M. Bluyssen, A. Boerstra, G. Buonanno, J. Cao, S. Dancer, A. Floto, F. Franchimon, C. Haworth, J. Hogeling, C. Isaxon, J.L. Jimenez, J. Kurnitski, Y. Li, M. Loomans, G. Marks, L.C. Marr, L. Mazzarella, A.K. Melikov, S. Miller, D.K. Milton, W. Nazaroff, P.V. Nielsen, C. Noakes, J. Peccia, X. Querol, C. Sekhar, O. Seppänen, S.-I. Tanabe, R. Tellier, K.W. Tham, P. Wargocki, A. Wierzbicka, M. Yao. 2020. How can airborne transmission of COVID-19 indoors be minimised?, Environment International, 142, 105832, doi:10.1016/j.envint.2020.105832.

Blocken, B., T. van Druenen, T. van Hooff, P.A. Verstappen, T. Marchal, L.C. Marr. 2020. Can indoor sports centers be allowed to re-open during the COVID-19 pandemic based on a certificate of equivalence?, Building and Environment, 180, 107022, doi:10.1016/j.buildenv.2020.107022.

Dancer, S.J., J.W. Tang, L.C. Marr, S. Miller, L. Morawska, J.L. Jimenez. 2020. Putting a balance on the aerosolization debate around SARS-CoV-2, Journal of Hospital Infection, 105, 569-570, doi:10.1016/j.jhin.2020.0

Hernandez, S., J. J. Maurer, M. Yabsley, V. E. Peters, A. Presotto, M. Murray, S. Curry, S. Sanchez, P. Gerner-Smidt, K. Hise, J. Huang, K. Johnson, T. Kwan, and E. K. Lipp. 2021. Free-living aquatic turtles are reservoirs and serve as sentinels of Salmonella spp. for water bodies. Front. Vet. Sci. (In Press).

Pedroso, A. A., M. D. Lee, and J. J. Maurer*. 2021. Strength lies in diversity: how community diversity limits Salmonella abundance in the chicken intestine. Front. Microbiol. 12:694215. doi: 10.3389/fmicb.2021.694215.

Hutcheson, A. R., K. Thompson, J. J. Maurer, N. Ferguson, K. Grogan, S. Roney, H. Seahorn, C. Lobsinger, and M. D. Lee. 2020. Differentiating vaccine-related fowl cholera from naturally occurring disease. Avian Dis. 64:437-444.

Saadat*^G, A. and S. B. Melville. 2021. Holin-dependent secretion of the large clostridial toxin TpeL by Clostridium perfringens. J Bacteriol. 203: https://doi.org/10.1128/JB.00580-20

Jackson DR, Cassilly CD, Plichta DR, Vlamakis H, Liu^G H*, Melville SB, Xavier RJ, Clardy J. Plasmalogen Biosynthesis by Anaerobic Bacteria: Identification of a Two-Gene Operon Responsible for Plasmalogen Production in Clostridium perfringens. ACS Chem Biol. 2021 Jan 15;16(1):6-13. doi: 10.1021/acschembio.0c00673. Note: Chosen as an ACS Editor’s Choice article.

Cory Q. Wenzel, Dominic C. Mills, Justyna M. Dobruchowska, Harald Nothaft, Parastoo Azadi, Stephen B. Melville, Russell W. Carlson^,Mario F. Feldman and Christine M. Szymanski. 2020 An atypical lipoteichoic acid from Clostridium perfringens elicits a broadly cross-reactive and protective immune response. J Biol Chem. 295(28):9513-9530. doi: 10.1074/jbc.RA119.009978

Meng XJ, and Thiel V. 2020. Emerging and re-emerging porcine viruses. Virus Research. 2020 Dec;290:198198. doi: 10.1016/j.virusres.2020.198198.

Wang B, and Meng XJ. 2021. Hepatitis E virus: host tropism and zoonotic infection. Current Opinion in Microbiology. 2021 Feb;59:8-15. doi: 10.1016/j.mib.2020.07.004.

Sooryanarain H, X.J. Meng. 2020. Swine hepatitis E virus: cross-species infection and food safety. Virus Research. 2020 Jul 15;284:197985. doi: 10.1016/j.virusres.2020.197985

Wang B, Meng XJ. 2021. Structural and molecular biology of hepatitis E virus. Computational and Structural Biotechnology Journal. 2021 Apr 7;19:1907-1916. doi: 10.1016/j.csbj.2021.03.038.

Meng XJ, Liang TJ. 2021. SARS-CoV-2 Infection in the Gastrointestinal Tract: Fecal-Oral Route of Transmission for COVID-19? Gastroenterology. 2021 Apr;160(5):1467-1469. doi: 10.1053/j.gastro.2021.01.005.

Maeda DLNF, Tian D, Yu H, Dar N, Rajasekaran V, Meng S, Mahsoub HM, Sooryanarain H, Wang B, Heffron CL, Hassebroek A, LeRoith T, Meng XJ, Zeichner SL. 2021. Killed whole-genome reduced-bacteria surface-expressed coronavirus fusion peptide vaccines protect against disease in a porcine model. Proc Natl Acad Sci USA. 2021 May 4;118(18):e2025622118. doi: 10.1073/pnas.2025622118.

Tian D, S. Subramaniam; C.L. Heffron, H.M. Mahsoub, H. Sooryanarain B. Wang, Q.M. Cao, A.M. Hassebroek, T. LeRoith, D.L. Foss, J.G. Calvert, and X.J. Meng. 2020. Construction and efficacy evaluation of novel swine leukocyte antigen (SLA) class I and class II allele-specific poly-T cell epitope vaccines against porcine reproductive and respiratory syndrome virus. Journal of General Virology. 2020 Nov;101(11):1191-1201. doi: 10.1099/jgv.0.001492.

Smith DB, J. Izopet, F. Nicot, P. Simmonds, S. Jameel, X.J. Meng, H. Norder, H. Okamoto, W.H.M Van der Poel, G. Reuter, and M.A. Purdy. 2020. Updated: proposed reference sequences for subtypes of hepatitis E virus (species Orthohepevirus A). Journal of General Virology. J Gen Virol. 2020 Jul;101(7):692-698. doi:10.1099/jgv.0.001435.

Lu Y, S. Clark-Deener, F. Gillam, C.L. Heffron, D. Tian, H. Sooryanarain, T. LeRoith, J. Zoghby, M. Henshaw, S. Waldrop, J. Pittman, X.J. Meng, and C. Zhang. 2020. Virus-like particle vaccine with B-cell epitope from porcine epidemic diarrhea virus (PEDV) incorporated into hepatitis B virus core capsid provides partial clinical alleviation against PEDV in neonatal piglets through lactogenic immunity. Vaccine. 2020 Jul 14;38(33):5212-5218. doi: 10.1016/j.vaccine.2020.06.009.

Lu Y, F. Gillam, Q.M. Cao, A. Rizzo, X. J. Meng, and C. Zhang. 2020. Hepatitis B core antigen-based vaccine incorporated with both B- cell and T-cell epitopes demonstrates cross-neutralization against heterologous porcine reproductive and respiratory syndrome virus. Journal of Virological Methods. 2020 Nov;285:113945. doi: 10.1016/j.jviromet.2020.113945.

Chuong^G, C.; Duchane^P, C.M.; Webb^G, E.M.; Rai^G, P.; Marano^G, J.M.; Bernier^G, C.M.; Merola, J.S.; Weger-Lucarelli, J. Noble Metal Organometallic Complexes Display Antiviral Activity against Sars-Cov-2. Viruses 2021, 13, doi:10.3390/v13060980.

Brown*, C.L., Garner, E, Jospin, G., Coil, D.A., Schwake, D.O., Eisen, J.A., Mukhopadhyay, B., Pruden, A.J. 2020. Whole genome sequence analysis reveals the broad distribution of the RtxA type 1 secretion system and four novel putative type 1 secretion systems throughout the Legionella genus. PLoS One. 2020 15:e0223033. doi:10.1371/journal.pone.0223033

Dhakal J^P, Jia M^P, Joyce JD^G, Moore GA, Ovissipour R, Bertke AS. 2021. Survival of Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) and Herpes Simplex Virus 1 (HSV-1) on Foods Stored at Refrigerated Temperature. Foods. 10(5):1005.

Shiroodi S^P, Schwarz M, Nitin N, Ovissipour, R. 2021. Efficacy of nanobubbles alone or in combination with neutral electrolyzed water in removing Escherichia coli O157:H7, Vibrio parahaemolyticus, and Listeria innocua biofilms Biofilms Inactivation Using Nanobubbles. Food and Bioprocess Technology. DOI: 10.1007/s11947-020-02572-0.

Batish I^G, Brits D, Valencia P, Miyai C^P, Rafeeq S, Xu Y, Galanopoulos M, Sismour E, Ovissipour R. 2020. Effects of Enzymatic Hydrolysis on the Functional Properties, Antioxidant Activity and Protein Structure of Black Soldier Fly (Hermetia illucens) Protein. Insects. (12):876.

Rafeeq S^G, Shiroodi S^P, Schwarz MH, Nitin N, Ovissipour R. 2020. Inactivation of Aeromonas hydrophila and Vibrio parahaemolyticus by Curcumin-Mediated Photosensitization and Nanobubble-Ultrasonication Approaches. Foods. (9):1306.

Chen, L., Wei, X., Chaves, B.D., Jones, D., Ponder,M.A., and J. Subbiah. 2021. Inactivation of Salmonella enterica and Enterococcus faecium NRRL B2354 on cumin seeds using gaseous ethylene oxide. Food Microbiology. 94: 103656.

Wei, X., Chen, L., Chaves, B.D., Ponder,M.A., and J. Subbiah. 2021 Modeling the effect of temperature and relative humidity on the ethylene oxide fumigation of Salmonella and Enterococcus faecium in whole black peppercorn. LWT. 140. 110742.

Acuff, J. C., Wu, J., Marik, C., Waterman, K., Gallagher, D., Huang, H., Ponder, M. A. (2020). Thermal inactivation of Salmonella, Shiga toxin-producing Escherichia coli, Listeria monocytogenes, and a surrogate (Pediococcus acidilactici) on raisins, apricot halves, and macadamia nuts using vacuum-steam pasteurization. International Journal of Food Microbiology 333, 10 pages. doi:10.1016/j.ijfoodmicro.2020.108814

Wu, J., Acuff, J., Waterman, K., & Ponder, M. A. (2020). Evaluation of Listeria monocytogenes and Staphylococcus aureus survival and growth during cooling of hams cured with natural-source nitrite. Journal of food protection. doi:10.4315/jfp-20-249

Acuff, J. C., Waterman, K., Ramakrishnan, J., and Ponder, M. A. (2021). Thermal Resistance of Single Strains of Shiga Toxin–Producing Escherichia coli O121: H19 and O157: H7 Based on Culture Preparation Method and Osmolyte-Reduced Water Activity. Journal of Food Protection, 84 (1): 122-127

Guron, G., Chen, C.., Pang, D.., Pruden A. and M. Ponder. 2021

Manure-Based Amendments Influence Surface-Associated Bacteria and Markers of Antibiotic Resistance on Radishes Grown in Soils with Different Textures. Applied and Environmental Microbiology. 87(10), e02753-20

Kaus, G.M., L.F. Snyder, U. Müh, M.J. FloresG, D.L. Popham, and C.D. Ellermeier (2020) Lysozyme resistance in Clostridioides difficile is dependent on two peptidoglycan deacetylases. J Bacteriol. Oct 2020, 202 (22); DOI: 10.1128/JB.00421-20

Wind, L.^G, Keenum, I.^G, Gupta, S.^G, Ray, P.^P, Knowlton, K., Ponder, M., Hession, WC, Pruden, A., and LA Krometis. 2021. Integrated Metagenomic Assessment of Multiple Pre-harvest Control Points on Lettuce Resistomes at Field-Scale. Frontiers in Microbiology. https://doi.org/10.3389/fmicb.2021.683410 .

Keenum, I.M.^G, Crespo Medina, M.^G, Garner, E.D.^P; Pieper, K.J.^P, Blair, M.F.^G, Milligan, E.^G, Pruden, A., Ramirez-Toro, G., and W.J. Rhoads, W.J.^P 2021. Source-to-Tap Assessment of Microbiological Water Quality in Small Rural Drinking Water Systems in Puerto Rico Six Months After Hurricane Maria. Environmental Science & Technology. 55(6):3775-3785. https://doi.org/10.1021/acs.est.0c08814

Liang, X.^G, Akers, K.^G, Keenum, I.^G, Wind, L.^G, Gupta, S.^G, Chen, C.^P, Adaihani, R.^G, Pruden, A., Zhang, L., Knowlton, K.F., Xia, K., L.S. Heath 2021. Agroseek: A system for computational analysis of environmental metagenomic data and associated metadata. BMC Bioinformatics. 22, Article number: 117. https://doi.org/10.1186/s12859-021-04035-5

Mantha, A.^G, Doshi, P.^G, Carneal, M.G.^G, Taylor, J.E., Pruden, A., Edwards, M.A.; A.R. Pearce 2021. Identifying Leverage Points in U.S. Residential Water Heater Stakeholder System and Decision-Making Process: An Integrative Review. Journal of Green Buildings. 16(1): 43-59. https://doi.org/10.3992/jgb.16.1.43

Keenum, I.M.^G, Williams, Robert K.^G, Ray, P.^P, Garner, E.D.^G, Knowlton, K.F., and Pruden, A. 2021. Combined Effects of Composting and Antibiotic Administration on Cattle Manure-borne Antibiotic Resistance Genes. Microbiome. 9, Article number: 81. https://doi.org/10.1186/s40168-021-01006-z

Brown, C.L.^G, Keenum, I.M.^G, Dai, D.^G, Zhang, L.Q., Vikesland, P.J., and A. Pruden. 2021. Critical evaluation of short, long, and hybrid assembly for contextual analysis of antibiotic resistance genes in complex environmental metagenomes. Scientific Reports 11, 3753 https://doi.org/10.1038/s41598-021-83081-8

Song, Y.^G, Pruden, A., Edwards, M.A., and W.J. Rhoads^P. 2021. Natural Organic Matter, Orthophosphate, pH, and Growth Phase can Limit Copper Antimicrobial Efficacy for Legionella in Drinking Water. Environmental Science & Technology. 55, 3, 1759–1768. https://doi.org/10.1021/acs.est.0c06804

Vaidya, R.^G, Wilson, C.A., Salazar-Benites, G., Pruden, A., and C. Bott. 2021. Factors affecting removal of NDMA in an ozone-biofiltration process for water reuse. Chemosphere. 261(1) https://doi.org/10.1016/j.chemosphere.2020.128333

Rhoads, W.J. ^P, Keane, T., Spencer, M.S.^G, Pruden, A., and M.E. Edwards. 2020. Did Municipal Water Distribution System Deficiencies Contribute to a Legionnaires’ Disease Outbreak in Quincy, IL? Environmental Science & Technology Letters. 7(12): 896–902. https://doi.org/10.1021/acs.estlett.0c00637

Cullom, A.C.^G, Martin, R.L.^G, Song, Y.^G, Williams, K.^G, Williams, A.^G; Pruden, A., and M.A. Edwards. 2020. Critical Review: Propensity of Premise Plumbing Pipe Materials to Enhance or Diminish Growth of Legionella and Other Opportunistic Pathogens. Pathogens. 9(11), 957; https://doi.org/10.3390/pathogens9110957 .

Spencer, M.S. ^G, Cullom, A.C.^G, Rhoads, W.J.^P, Pruden, A., and M.E. Edwards. 2020. Replicable simulation of distal hot water premise plumbing using convectively-mixed pipe reactors. Plos One. https://doi.org/10.1371/journal.pone.0238385

Martin, R.^G, Strom, O.^G, Pruden, A.; and M.E. Edwards. 2020. Copper Pipe, Stagnant Conditions, Corrosion Control, and Trace Disinfectant Residual Enhanced Reduction of Legionella pneumophila during Simulations of the Flint Water Crisis. Pathogens Special Issue on Legionella Contamination in the Water Environment. 9(9), 730; https://doi.org/10.3390/pathogens9090730

Martin, R.L. ^G, Harrison, K.L.^U, Proctor, C.R. ^U, Martin, A. ^G, Williams, K. ^G, Pruden, A., and M.A. Edwards. 2020. Chlorine Disinfection of Legionella spp., L. pneumophila, and Acanthamoeba under Warm Water Premise Plumbing Conditions. Microorganisms Special Issue on Legionella and Legionnaires’ Disease: Pathogenesis, Prevention, and Public Health. 8, 1452; doi:10.3390/microorganisms8091452

Zhu, N.^G, Mapili, K.^G, Majeed, H.J.^G, Pruden, A., and M.A. Edwards. 2020. Sediment and biofilm affect disinfectant decay rates during long-term operation of simulated reclaimed water distribution systems. Environ. Sci: Water Res. Technol. 6(6):DOI: 10.1039/c9ew00978g

Zhu, N.^G, Ghosh, S.^P, Strom, L.^G, Pruden, A., and M.A. Edwards. 2020. Effects of BAC-filtration, disinfection, and temperature on water quality in simulated reclaimed water distribution systems. Environ. Sci: Water Res. Technol. 6(11): 3106-3120. DOI: 10.1039/d0ew00581a

Marano, R.B.M.; Fernandes, T; Manaia, C.M.; Nunes, O.; Morrison, D.; Berendonk, T.U.; Kreuzinger, N.; Telson, T.; Corno, G.; Fatta-Kassinos, D.; Pruden, A.; Cytryn, E., and 73 others. (2020). A global multinational survey of cefotaxime-resistant coliforms in urban wastewater treatment plants. Environment International. 144 (106035). DOI: 10.1016/j.envint.2020.106035

Vaidya, R. ^G, Wilson, C.A., Salazar-Benites, G., Pruden, A., and C. Bott. 2020. Implementing Ozone-BAC-GAC in potable reuse for removal of emerging contaminants. AWWA Water Science. 05 Oct. https://doi.org/10.1002/aws2.1203

Rao J, Adenikinju A^G, Gray JM^G, Colpitts L, Prorock A, Bao Y, Kerkering TM, Garner DC, and Jensen RV (2021). Comparative transcriptomic analysis of Pseudomonas aeruginosa isolates from ICU patients with acute and chronic pneumonia. International Archives of Medical Microbiology. In press. https://doi.org/10.23937/2643-4008/1710012.

Childers C^G, Edsall C, Gannon J, Whittington A, Muelenaer A, Rao J, Vlaisavljevich E (2021). Focused Ultrasound Biofilm Ablation: Investigation of Histotripsy for the Treatment of Catheter-Associated Urinary Tract Infections (CAUTIs). IEEE Transactions on Ultrasonics, Ferroelectrics, and Frequency Control 1. https://doi.org/10.1109/TUFFC.2021.3077704.

Liu, X.; Ming, W.; Luo, X.; Friedrich, A.; Maier, J.; Radius, U.; Santos, W.L.; Marder, T.B. Regio- and Stereoselective Synthesis of 1,1-Diborylalkenes via Brønsted Base-Catalyzed Mixed Diboration of Alkynes with BpinBdan, Eur. J. Org. Chem. 2020, 1941-1946. http://dx.doi.org/10.1002/ejoc.202000128.

Alexopoulos, S.J.; Chen, S.; Brandon, A.E.; Salamoun, J.M.; Byrne, F.L.; Garcia, C.J.; Beretta, M.; Olzomer, E.M.; Shah, D.P.; Philp, A.M.; Hargett, S.R.; Lawrence, R.T.; Lee, B.; Sligar, J.; Carrive, P.; Tucker, S.P.; Philp, A.; Lackner, C.; Turner, N.; Cooney, G.J.; Santos, W.L.; Hoehn, K.L. Mitochondrial uncoupler BAM15 reverses diet-induced obesity and insulin resistance in mice, Nat. Commun. 2020, 11, 2397. *Santos is corresponding author highlighted in Science Daily, VT News, News Break, Medicalxpress

Salamoun, J.M.; Garcia, C.J.; Hargett, S.R.; Murray, J.; Chen, S-Y; Beretta, M.; Alexopoulos, S.J.; Shah, D.; Olzomer, E.M.; Tucker, S.P.; Hoehn, K.L. and Santos, W.L. 6-Amino-[1,2,5]oxadiazolo[3,4-b]pyrazin-5-ol Derivatives as Efficacious Mitochondrial Uncouplers in STAM Mouse Model of Non-alcoholic Steatohepatitis, J. Med. Chem. 2020, 63, 6203-6224. https://doi.org/10.1021/acs.jmedchem.0c00542 Selected as front cover

Fritzemeier, R.G.; Nekvinda, J.; Vogels, C.M.; Rosenblum, C.A.; Slebodnick, C.; Westcott, S.A.; Santos, W.L. Organocatalytic trans Phosphinoboration of Internal Alkynes, Angew. Chem. Int. Ed. 2020, 59, 14358 –14362. https://doi.org/10.1002/anie.202006096

Grams, R.J.; Garcia, C.J.; Szwetkowski, C.; Santos, W.L. Catalytic, Transition Metal-Free Semireduction of Propiolamide Derivatives: Scope and Mechanistic Investigation. Angew. Chem. Int. Ed. Org. Lett. 2020, 22, 7013–7018. doi.org/10.1021/acs.orglett.0c02567

Peck, C.; Nekvinda, J.; Santos, W.L. Diboration of 3-Substituted Propargylic Alcohols using a Bimetallic Catalyst System: Access to (Z)-Allyl, Vinyldiboronates. Chem. Commun. 2020, 56, 10313-10316. doi.org/10.1039/D0CC03563G

McDaniels, J.M.; Huckaby, A.C.; Carter, S.A.; Lingeman, S.; Francis, A.; Congdon, M.; Santos, W.L.; Phillips, M.A.; Rathod, P.K.; Guler, J. A. The Generation of Extra-chromosomal DNA Amplicons in Antimalarial Resistant Plasmodium falciparum, 2021, 115, 574–590. https://doi.org/10.1111/mmi.14624

Snead, R. J.; Nekvinda, J.; Santos, W.L. Copper(II)-catalyzed Protoboration of Allenes in Aqueous Media and Open Air. New J. Chem. 2021, DOI: 10.1039/D0NJ02010A . Invited contribution: “Boron & Beyond – Todd B. Marder’s Contributions to Chemistry”

Jos, S.; Santos, W.L. Copper-catalyzed Synthesis of α-Trifluoromethylacrylates from Trifluoroborylacrylates via Stereoretentive Radical Trifluoromethylation. Adv. Syn. Catal. 2021, 363, 425–430. VIP communication https://doi.org/10.1002/adsc.202000937 Selected as front cover

Li, H.; Sibley, C.D.; Kharel, Y.; Brown, A.M.; Bevan, D.R.; Lynch, K.R.; Santos, W.L. Lipophilic Tail Modifications of (R)-prolinol-based Inhibitors of Sphingosine Kinase 1. Bioorg. Med. Chem. 2020, 30, 115941. https://doi.org/10.1016/j.bmc.2020.115941

Congdon, M.; Fritzemeier, R. F.; Kharel, Y.; Brown, A.M.; Bevan, D.R.; Lynch, K.R.; Santos, W.L. Probing the Substitution Pattern of Indole-Based Scaffold Reveal Potent and Selective Sphingosine Kinase 2 Inhibitors. Eur. J. Med. Chem. 2021, 30, 115941. https://doi.org/10.1016/j.ejmech.2020.113121

Murray, J.H.; Santos, W.L. Bis(1,1-dimethylethyl)[2′,4′,6′-tris-(1-methylethyl)[1,1′-biphenyl]-2-yl]-phosphine and Dicyclohexyl[2′,4′,6′-tris(1-methylethyl)[1,1′-biphenyl]-2-yl]phosphine (XPhos). e-EROS Encyclopedia of Reagents for Organic Synthesis, 2021, https://onlinelibrary.wiley.com/doi/10.1002/047084289X.rn00923.pub4.

Chen, S-Y; Beretta, M.; Alexopoulos, S.J.; Shah, D.; Olzomer, E.M.; Hargett, S.R.; Childress, E.S.; Salamoun, J.M.; Roseblade, A.; Cranfield, C.; Rawling, T.; Tucker, S.P.; Santos, W.L.; Hoehn, K.L. Potent mitochondrial uncoupler SHC517 reverses diet-induced obesity in mice. Metabolism 2021, 117, 154724. https://doi.org/10.1016/j.metabol.2021.154724

Shakiba N., Edholm C., Blessing O. E., Murillo A., Saucedo O., Wang X., Peace, A., Allen L.J.S. 2021. Effects of Environmental Variability on Superspreading Transmission Events in Stochastic Epidemic. Infectious Disease Modelling 6: 560-583.

K.K. ComptonG, Hildreth S.B., Helm R.F., Scharf B.E. 2020. An updated perspective on Sinorhizobium meliloti chemotaxis to alfalfa flavonoids. Frontiers in Microbiology 11, 1-12.

N.C. EstevesG, Porwollik S., McClelland M., Scharf B.E. 2021. The multi-drug efflux system AcrABZ-TolC is essential for infection of Salmonella Typhimurium by the flagellumdependent bacteriophage Chi. Journal of Virology 59(11), 1-13.

F. GonzalezG & Scharf B.E. 2021. Natural bacteria killers: How bacteriophages find and eliminate their hosts. Frontiers for Young Minds 9, 1-9.

K.K. ComptonP & Scharf B.E. 2021. Rhizobial chemoattractants, the taste and preferences oflegume symbionts. Frontiers in Plant Science 12, 1-8.

Ristaino, J.B., , Anderson, P., Bebber, D., Brauman, K.A., Cunniffe, N.J., Federoff, N., Finegold, C., Garrett, K.A., Gilligan, C.A., Jones, C., Martin, M., MacDonald, G.K., Neenan, P., Records, A., SCHMALE, D.G., Tateosian, L., Wei, Q. 202_. The Persistent Threat of Emerging Plant Disease Pandemics to Global Food Security. PNAS. In review.

HARB^G, C., PAN^G, J., DeVilbiss, S., Badgley, B., MARR, L., SCHMALE, D., FOROUTAN, H. 2021. Increasing Freshwater Salinity Impacts Aerosolized Bacteria. Environmental Science and Technology, 55, 9, 5731–5741

NAVE^G, G., Hall, N., Somers^U, K., Davis^U, B., Gruszewski^T, H., Powers^G, C., Collver, C., SCHMALE, D.G., ROSS, S.D., Shane D. Wind dispersal of natural and biomimetic maple samaras. 2021. Biomimetics 6: 23. https://doi.org/10.3390/biomimetics6020023

Machado, F., Kunem, P.R., Casa, R.T., McMaster, N., SCHMALE, D.G., Vaillancourt, L., Del Ponte, E. 2021. The dominance of Fusarium meridionale over F. graminearum causing Gibberella ear rot in Brazil may be due to increased aggressiveness and competitiveness. Phytopathology, https://doi.org/10.1094/PHYTO-11-20-0515-R.

Gonzalez-Roha^G, J., Sosa, A., Hanlon, R., Allen, A., Rypina, I., SCHMALE, D.G., and ROSS, S.D. 2021. Multirotor-assisted measurements of wind-induced drift of irregularly shaped objects in aquatic environments. Applied Ocean Research 110: 102538.

Geiser, David M.; Al-Hatmi, Abdullah; Aoki, Takayuki; Arie, Tsutomu; Balmas, Virgilio; Barnes, Irene; Bergstrom, Gary C.; Bhattacharyya, M. K. K.; Blomquist, Cheryl L.; Bowden, Robert, SCHMALE, D.G. et al. 2020. Phylogenomic analysis of a 55.1 kb 19-gene dataset resolves a monophyletic Fusarium that includes the Fusarium solani Species Complex. Phytopathology, https://doi.org/10.1094/PHYTO-08-20-0330-LE.

Carpenter, N.R., Wright, E., Malla, S., Singh, L., Van Sanford, D., Clark, A., Harrison, S., Murphy, J.P., Costa, J., Chao, S. Brown‐Guedira, G.L., McMaster, N, SCHMALE, D.G., Griffey, C, and Rawat, N. 2020. Identification and Validation of FHB Resistance QTL in the US Soft Red Winter Wheat Variety Jamestown. Crop Science, 60: 2919-2930.

de Boer, G. Houston, A., Jacob, J., Chilson, P.B., Smith, S.W., Argrow, B., Lawrence, D., Elston, J., Brus, D., Kemppinen, O., Klein, P., Lundquist, J.K., Waugh, S., Bailey, S., Frazier, A., Sama, M.P., Crick, C., SCHMALE, D.G, Pinto, J., Pillar-Little, E.A., Natalie, V., and Jensen, A. 2020. Data Generated During the 2018 LAPSE-RATE Campaign: An Introduction and Overview. Earth System Science Data, 12:3357-3366.

Seifried, T., Bieber, P., Felgitsch, L., Vlasich, J., Reyzek, F., SCHMALE, D.G., and Grothe, H. 2020. Surfaces of Silver Birch (Betula pendula) are Sources of Biological Ice Nuclei: In-vivo and In-situ Investigations. Biogeosciences, 17:5655-5667.

PACK^G, E., Stewart, J., Rhoads, M., Knight, J., Clark-Deener, S., SCHMALE, D.G, and De Vita, R. 2020. Effects of short-term moderate ZEN consumption on uterosacral ligament elasticity in pubertal gilts. Research in Veterinary Science, 133:202-209.

PACK^G, E., Stewart, J., Rhoads, M., Knight, J., De Vita, R., Clark-Deener, S., and SCHMALE, D.G. 2020. Quantification of the mycotoxins zearalenone and α-zearalenol in swine reproductive tissues using GC-MS. Toxicon X, 10058.

Park^G, H., Kim, S., Gruszewski^T, H., SCHMALE, D.G., Boreyko, J., and Jung., S. 2020. Dynamics of Splashed Droplets Impacting Wheat Leaves Treated with a Fungicide. Journal of the Royal Society Interface, 17: 20200337.

Valverde-Bogantes, E., Bolanos-Carriel, C., Hallen-Adams, H.E., McMaster, N., SCHMALE, D.G., and Wegulo, S. 2020. Aggressiveness and Deoxynivalenol Production of Nebraska Isolates of Fusarium boothii and F. graminearum. Plant Health Progress, 10.1094/PHP-01-20-0001-RS.

Bieber, P., Seifried, T.M., Burkart, J., Gratzl, J., Kasper-Giebl, A., SCHMALE, D.G., and Grothe. 2020. A Drone-Based Bioaerosol Sampling System to Monitor Ice Nucleation Particles in the Lower Atmosphere. Remote Sensing, 12(3), 552.

Jimenez-Sanchez^P, C., Wilson^G, N., McMaster, N., Gantulga^P, G., Freedman, B., Senger, R., and SCHMALE, D.G. 2020. A Mycotoxin Transporter (4D) from a Library of Deoxynivalenol-Tolerant Microorganisms. Toxicon X, 5, 100023.

Moore, R., Hanlon, R., Powers, C., SCHMALE, D.G., and Christner, B. 2020. Scavenging of sub-micron to micron-sized microbial aerosols during simulated rainfall. Atmosphere, 11(1), 80.

Bolanos-Carriel, C., Wegulo, S., Hallen-Adams, H., Baenziger, P., Eskridge, K., Funnell-Harris, D., McMaster, N., and SCHMALE, D.G. 2020. Effects of field-applied fungicides, grain moisture, and time on deoxynivalenol during postharvest storage of winter wheat grain. Canadian Journal of Plant Science, 100(3): 304-313.

Bolanos-Carriel C, Wegulo SN, Baenziger PS, Eskridge KM, Funnell-Harris D, Mcmaster N, SCHMALE DG, Hallen-Adams HE. 2020. Tri5 gene expression analysis during postharvest storage of wheat grain from field plots treated with a triazole and a strobilurin fungicide. Canadian Journal of Plant Pathology, 42(4):547-559.

de Boer, G., Diehl, C., Jacob, J., Houston, A., Smith, S.W., Chilson, P., SCHMALE, D.G., Intrieri, J., Pinto, J., Elston, J, Brus, D., Kemppinen, O., Clark, A., Lawrence, D., Bailey, S.C.C., Sama, M.P., Frazier, A., Crick, C., Natalie, V., Pillar-Little, E., Klein, P., Waugh, S., Lundquist, J.K., Barbieri, L., Kral, S.T., Jensen, A.A., Dixon, C., Borenstein, S., Hesselius, D.S., Human, K., Hall, P., Argrow, B., Thornberry, T., Gao, R.S., Wright, R., Kelly, J.T. 2020. Development of community, capabilities and understanding through unmanned aircraft-based atmospheric research: The LAPSE-RATE campaign. Bulletin of the American Meteorological Society,101 (5): E684-E699.

Aho, K., Weber, C.F., Christne, B.C., Vinatzer, B.A., Morris, C.E., Joyce, R., Failor K., Werth, J.T., Bayless-Edwards, A.L.H., SCHMALE, D.G. 2020. Spatiotemporal patterns of microbial composition and diversity in precipitation. Ecological Monographs, 90 (1), e01394.

Archer^G, W. R., Schulz, M. D. (2020). Isothermal titration calorimetry: practical approaches and current applications in soft matter. Soft Matter, 16(38), 8760-8774. doi:10.1039/d0sm01345e

Bianculli^G, R. H., Mase^G, J. D., Schulz, M. D. (2020). Antiviral Polymers: Past Approaches and Future Possibilities. Macromolecules, 53(21), 9158-9186. doi:10.1021/acs.macromol.0c01273 Featured on the front cover of Macroolecules

Selected as an ACS Editors’ Choice Article. Most read article in Macromolecules November 2020-present

Hall^G, B. A., Shelton^U, E. B., Wu^U, Y., & Schulz, M. D. (2020). Synthesis and post-polymerization modification of poly(arylene ether sulfone)s containing pendant sulfonamide groups. Polymer 2021, 212, 123186.

Archer^G, W. R., Thompson^G, T. N., & Schulz, M. D. (2020). Effect of Copolymer Structure on Rare-Earth-Element Chelation Thermodynamics. Macromol. Rapid Commun. 2021, 42, 2000614. DOI: 10.1002/marc.202000614 Invited as part of the “Young Talents in Polymer Science” Special Issue

Bardot^U, M., & Schulz, M. D. (2020). Biodegradable Poly(Lactic Acid) Nanocomposites for Fused Deposition Modeling 3D Printing.. Nanomaterials, 10(12). doi:10.3390/nano10122567

M. Magana; M. Pushpanathan, A. Santos L. Lense; M. Fernandez; A. Ioannidis; M. A GiulianottI; Y. Apidianakis; S. Bradfute; A. Ferguson; A. Cherkasov; M. N. Seleem; C. Pinilla; C. Fuente-Nunez; T. Lazaridis; T. Dai; R. A Houghten; R. E Hancock, G. Tegos* (2020). The value of antimicrobial peptides in the age of resistance. Lancet Infectious Diseases. 20, 9, 2020,216-230 IF= 27.51. PMID: 32653070

J. Hui, P. Dong, L. Liang, T. Mandal, J. Li, C. Ulloa, Y. Zhan, S. Jusuf, C. Zong, M. N. Seleem, G. Liu, Q. Cui, J. Cheng*. (2020). Photo-Disassembly of Membrane Microdomains Revives Conventional Antibiotics against MRSA. Advanced Science. 7(6): 1903117 IF= 15.84. PMID: 32195102

V. Selvamani, A. Zareei, A. Elkashif^G, M. K. Maruthamuthu, S. Chittiboyina, D. Delisi, Z. Li, L. Cai, V. G. Pol, M. N. Seleem, R. Rahimi*. (2020). Hierarchical Micro/Mesoporous Copper Structure with Enhanced Antimicrobial Property via Laser Surface Texturing. Advanced Materials Interfaces. 2020;7,1901890. IF= 4.94

M. Zhang, W. Hong, N. Abutaleb^G, J. Li, P. Dong, C. Zong, P. Wang, M. N. Seleem, J. Cheng*. (2020). Rapid Determination of Antimicrobial Susceptibility by Stimulated Raman Scattering Imaging of D2O Metabolic Incorporation in a Single Bacterium. Advanced Science. 2020,2001452. IF= 15.84. PMID: 33042757

Naclerio GA, Abutaleb NS^G, Onyedibe KI, M. N. Seleem and Sintim H*. (2020). Potent trifluoromethoxy, trifluoromethylsulfonyl, trifluoromethylthio and pentafluorosulfanyl containing (1,3,4-oxadiazol-2-yl)benzamides against drug-resistant Gram-positive bacteria. RSC Med. Chem. 2020,11, 102-110 IF= 3.049

Abdelkhalek^G, H. Mohammad^P, A. Mayhoub & M. N. Seleem*. (2020). Screening for potent and selective anticlostridial leads among FDA-approved drugs. The Journal of Antibiotics 73 (6), 392-409. IF= 2.60. PMID: 32132676

Young Jin Seong^G, A. Mayhoub, H. Mohammad^P & M. N. Seleem*. (2020). Repurposing fenamic acids drugs to combat multidrug-resistant Neisseria gonorrhoeae. Antimicrobial Agents and Chemotherapy. 64;7;2020. IF= 4.90. PMID: 32393483

S. Al-Trawneh*, N. Abutaleb^G, E. Salama^G, A. Tarawneh, and M. N. Seleem. (2020). Synthesis of new pyrazolo[5,1-c][1,2,4]triazines with antifungal and antibiofilm activities. Chemical Papers volume 74, pages1241–1252(2020). IF 1.68

Thomas A. Dietsche, Eldesouky HE^G, M. N. Seleem, and Jean Chmielewski*. (2020). Targeting Intracellular Pathogenic Bacteria Through N-Terminal Modification of Cationic Amphiphilic Polyproline Helices. Journal of Organic Chemistry. 2020, 85, 11, 7468–7475. IF= 4.33. PMID: 32425046

Shahin, Abutaleb NS^G, M. Alhashimi^G, A. Kassab, K. Mohamed, A. Taher, M. N. Seleem* & A. Mayhoub*. (2020). Evaluation of N-Phenyl-2-aminothiazoles for Treatment of Multi-Drug Resistant and Intracellular Staphylococcus aureus Infections. Eur J Med Chem 2020, 112497. IF= 5.57. PMID: 32707373

B. Sloan*, H. Mohammad^P, N. S. Abutaleb^G & M. N. Seleem. (2020). Comparison between a novel tap water wound irrigation device and a sterile saline device in an animal model. Trauma 22 (3), 176-181 (no IF yet)

M. G. Elnaggar, H. E. Eldesouky^G, Y. Pei, J. Park, H. Mohammad^P, Y. A. Hegazy^G, H. M. Tawfeek, A. A. Abdel-Rahman, A. E. Aboutaleb, M. N. Seleem, Y. Yeo*. (2020). Antibacterial nanotruffles for treatment of intracellular bacterial infection. Journal: Biomaterials. 262 (2020) 120344. IF 10.31. PMID: 32905902

W. Zhou, A. Hsu, T. Wang, J. Jefferies, H. Mohammad^P, Y. Liu, Z. Luo, D. Umulis, M. N. Seleem, Q. Deng*. (2020). Mitofusin 2 regulates neutrophil adhesive migration and the actin cytoskeleton. Journal of Cell Science. (2020) 133, jcs248880. IF= 4.57. PMID: 32788232

D. Mody^G, A. Athamneh^P, & M. N. Seleem*. (2020). Curcumin: A natural derivative with antibacterial activity against Clostridium difficile. Journal of Global Antimicrobial Resistance. 21(2020) 154-161 IF 2.7. PMID: 3162268

Kaur J, Cao X, Abutaleb NS^G, Elkashif A^G, Graboski AL, Tarawneh AH, Bhardwaj A, AbdelKhalek A^G, M. N. Seleem, Flaherty DP*. (2020). Optimization of Acetazolamide-Based Scaffold as Potent Inhibitors of Vancomycin-Resistant Enterococcus. J. Med. Chem. 2020, 63, 9540−9562. IF= 6.02. PMID: 32787141

H. Hamann, Abutaleb NS^G, R. Pal^G, M. N. Seleem*, P. V. Ramachandran*. (2020). Gamma-Diaryl alpha-methylene-gamma-butyrolactones as potent antibacterials against methicillin-resistant Staphylococcus aureus. Bioorganic Chemistry. 104, (2020), 104183 (IF= 4.8). PMID: 32971415

Hagras M, Abutaleb NS^G, N. Elhosseiny, T. Abdelghany, M. N. Seleem*, Mayhoub AS*. (2020). Development of biphenylthiazoles exhibiting improved pharmacokinetics and potent activity against intracellular Staphylococcus aureus. 2020, 6, 11, 2887–2900. ACS Infectious Diseases IF= 4.614. PMID: 32897045

G. Naclerio, N. Abutaleb^G, D. Li^G, M. N. Seleem*, H. Sintim* (2020). Ultrapotent inhibitor of Clostridioides difficile growth, which suppresses recurrence in vivo. 2020, 63, 20, 11934–11944. Journal of Medicinal Chemistry. IF=6.02. PMID: 32960605

V. Morales-de-Echegaray, L. Lin, B. Sivasubramaniam, A. Yermembetova, Q. Wang, Abutaleb NS^G, M. N. Seleem. & A. Wei. (2020). Antimicrobial Photodynamic Activity of Gallium-Substituted Haemoglobin on Silver Nanoparticles. 2020,12, 21734-21742. Nanoscale. IF=6.97. PMID: 33094755

Abdelkhalek^G and M. N. Seleem*. (2020). Repurposing the Veterinary Antiprotozoal Drug Ronidazole for the Treatment of Clostridioides difficile Infection. International Journal of Antimicrobial Agents. 56 (2020) 106188 IF=4.62. PMID: 33045352

J. Song, S. Malwal, N. Baig, L. Schurig-Briccio, Z. Gao, G. Vaidya, K. Yang, N. Abutaleb^G, M. N. Seleem, R. Gennis, T., V. Pogorelov, E. Oldfield, X. Feng*. (2020). Discovery of Prenyltransferase Inhibitors with In vitro and In vivo Antibacterial Activity. 2020, 6, 11, 2979–2993. ACS Infectious Diseases IF= 4.614. PMID: 33085463

H. Eldesouky^G, N. Lanman, T. Hazbun, M. N. Seleem*. (2020). Aprepitant, an antiemetic agent, interferes with metal ion homeostasis of Candida auris and displays potent synergistic interactions with azole drugs. Virulence 2020; 11(1): 1466–1481. IF=5.47. PMID: 33100149

N.S. Abutaleb^P, A. Elhassanny^P, D.P. Flaherty, M.N. Seleem*. (2021). In vitro and in vivo activities of the carbonic anhydrase inhibitor, dorzolamide, against vancomycin-resistant enterococci. PeerJ 9:e11059 IF= 2.38.

N.S. Abutaleb^P, and M.N. Seleem*. (2021). In vivo efficacy of auranofin in a hamster model of Clostridioides difficile infection. Scientific Reports, 11: 7093 (2021). IF= 3.99.

Hewitt, N.S. Abutaleb^P, A. Elhassanny^P, A. Nocentini, X. Cao, D. Amos, M. Youse, K. Holly, A. Marapaka, W. An, J. Kaur, A. Krabill, A. Elkashif^G, Y. Elgammal, A. L Graboski, C. T. Supuran, M. N. Seleem*, D. P. Flaherty. (2021). Structure–Activity Relationship Studies of Acetazolamide-Based Carbonic Anhydrase Inhibitors with Activity against Neisseria gonorrhoeae. ACS Infectious Diseases https://doi.org/10.1021/acsinfecdis.1c00055 IF= 4.614. PMID: 33765392

Ghosh, S. Varela‐Aramburu, H. E Eldesouky^P, S. Hossainy, M. N. Seleem, T. Aebischer, P. H Seeberger. (2021). Non‐Toxic Glycosylated Gold Nanoparticle‐Amphotericin B Conjugates Reduce Biofilms and Intracellular Burden of Fungi and Parasites. Advanced Therapeutics, 2021,4, 2000293 IF not determined yet.

M. Zhang, W. Hong, N. S. Abutaleb^G, J. Li, P. Dong, C. Zong, P. Wang, M. N. Seleem, J. Cheng. (2021). Rapid determination of antimicrobial susceptibility by stimulated Raman scattering imaging of D2O metabolic incorporation in a single bacterium. International Society for Optics and Photonics, 11656; 116560B

Coscia, N. Abutaleb^G, B. Hostette, M. N. Seleem, G. Breur, R. McCain, C. Crain, O. Slaby, M. Capoor, A. McDowell, F. Ahmed, V. Vijayanpillai, S. Narayanan and M. Coscia (2021). Sheep as a Potential Model of Intradiscal Infection by the Bacterium Cutibacterium acnes. Veterinary Sciences 8(48):48

M. Hamed^P and M. N. Seleem. (2021). Evaluation of Short Synthetic Antimicrobial Peptides against Staphylococcus pseudintermedius. Journal of Advanced Veterinary Research 11,2,(2021) 69-72

G. A Naclerio, N. S Abutaleb^P, M. Alhashimi^G, M. N. Seleem, H. O Sintim. (2021). N-(1, 3, 4-Oxadiazol-2-yl) Benzamides as Antibacterial Agents against Neisseria gonorrhoeae. International journal of molecular sciences. 22;5;242 IF= 4.55.

H. Mohammad^P, N. S. Abutaleb^P, A. M. Dieterly, L. T. Lyle & M. N. Seleem*. (2021). Investigating auranofin for the treatment of infected diabetic pressure ulcers in mice and dermal toxicity in pigs. Scientific Reports 11, 10935 (2021). IF= 3.99.

R. Pal^G, M. Dai, & M. N. Seleem*. (2021). High-throughput screening identifies a novel natural product-inspired scaffold capable of inhibiting Clostridioides difficile in vitro. Scientific Reports 11, 10913 (2021). IF= 3.99.

N. S. Abutaleb^P, 1 2, A. Elkashif^G, D. P. Flaherty, M. N. Seleem*. (2021). In vivo antibacterial activity of acetazolamide. Antimicrobial agents and chemotherapy. 18;65(4):e01715-20. IF 4.7.

H. Mohammad^P, N. S. Abutaleb^P, A. M. Dieterly, L. T. Lyle & M. N. Seleem*. (2021). Evaluation of ebselen in resolving a methicillin-resistant Staphylococcus aureus infection of pressure ulcers in obese and diabetic mice. PLoS ONE 16(2): e024750 IF= 2.8

H. E. Eldesouky^G, E. A. Salama^G, N. A. Lanman, T. R. Hazbun, M.N. Seleem*. (2021). Potent Synergistic Interactions between Lopinavir and Azole Antifungal Drugs against Emerging Multidrug-Resistant Candida auris. Antimicrobial Agents and Chemotherapy. 2021:65:1 IF 4.7.

Xu^G, Y., Du, P., Senger, R.S., Robertson, J.L., Pirkle, J.L. (2021) ISREA: An efficient peak-preserving baseline correction algorithm for Raman spectra. Applied Spectroscopy. 75(1):34-45.

Senger, R.S., Scherr^G, D. (2020) Resolving complex phenotypes with Raman spectroscopy and chemometrics. Current Opinion in Biotechnology. 66:277-282.

Wang^G, Z., Lee, Y-Y., Scherr^G, D., Senger, R.S., Li, Y., He, Z. (2020) Mitigating nutrient accumulation with microalgal growth towards enhanced nutrient removal and biomass production in an osmotic photobioreactor. Water Research. 182:116038 http://doi.org/10.1016/j.waters.2020.116038.

Huttanus^G, H.M., Senger, R.S. (2020) A synthetic biosensor to detect peroxisomal acetyl-CoA concentration for compartmentalized metabolic engineering. PeerJ. 8:e9805 https://doi.org/10.7717/peerj.9805.

Liang J*, Hodge JM*, Sharakhov IV: Asymmetric phenotypes of sterile hybrid males from reciprocal crosses between species of the Anopheles gambiae complex. Front Ecol Evol 2021, doi: 10.3389/fevo.2021.660207.

Zamyatin A, Avdeyev P, Liang J*, Sharma A, Chen C, Lukyanchikova V*, Alexeev N, Tu Z, Alekseyev MA, Sharakhov IV.Chromosome-level genome assemblies of the malaria vectors Anopheles coluzzii and Anopheles arabiensis. Gigascience. 2021 Mar 15;10(3):giab017. doi: 10.1093/gigascience/giab017.

Rafael MS, Bridi LC, Sharakhov IV, Marinotti O, Sharakhova MV, Timoshevskiy V, Guimarães-Marques GM, Santos VS, da Silva CGN, Astolfi-Filho S, Tadei WP. Physical Mapping of the Anopheles (Nyssorhynchus) darlingi Genomic Scaffolds. Insects. 2021 Feb 15;12(2):164. doi: 10.3390/insects12020164.

Haghighat-Khah RE, Sharma A, Wunderlich MR, Morselli G, Marston LA, Bamikole C, Hall A, Kranjc N, Taxiarchi C, Sharakhov I, Galizi R. Cellular mechanisms regulating synthetic sex ratio distortion in the Anopheles gambiae germline. Pathog Glob Health. 2020 Oct;114(7):370-378. doi: 10.1080/20477724.2020.1803628.

Xue AT, Schrider DR, Kern AD; Ag1000g Consortium. Discovery of Ongoing Selective Sweeps within Anopheles Mosquito Populations Using Deep Learning. Mol Biol Evol. 2021 Mar 9;38(3):1168-1183. doi: 10.1093/molbev/msaa259.

Anopheles gambiae 1000 Genomes Consortium. Genome variation and population structure among 1142 mosquitoes of the African malaria vector species Anopheles gambiae and Anopheles coluzzii. Genome Res. 2020 Oct;30(10):1533-1546.

Bondarenko SM*, Sharakhov IV. Reorganization of the nuclear architecture in the Drosophila melanogaster Lamin B mutant lacking the CaaX box. Nucleus. 2020 Dec;11(1):283-298.

Sun C, Huang J, Wang Y, Zhao X, Su L, Thomas GWC, Zhao M, Zhang X, Jungreis I, Kellis M, Vicario S, Sharakhov IV, Bondarenko SM, Hasselmann M, Kim CN, Paten B, Penso-Dolfin L, Wang L, Chang Y, Gao Q, Ma L, Ma L, Zhang Z, Zhang H, Zhang H, Ruzzante L, Robertson HM, Zhu Y, Liu Y, Yang H, Ding L, Wang Q, Ma D, Xu W, Liang C, Itgen MW, Mee L, Cao G, Zhang Z, Sadd BM, Hahn MW, Schaack S, Barribeau SM, Williams PH, Waterhouse RM, Mueller RL. Genus-Wide Characterization of Bumblebee Genomes Provides Insights into Their Evolution and Variation in Ecological and Behavioral Traits. Mol Biol Evol. 2021 Jan 23;38(2):486-501.

Compton A, Liang J*, Chen C, Lukyanchikova V, Qi Y, Potters M, Settlage R, Miller D, Deschamps S, Mao C, Llaca V, Sharakhov IV, Tu Z. The Beginning of the End: A Chromosomal Assembly of the New World Malaria Mosquito Ends with a Novel Telomere. G3 (Bethesda). 2020 Oct 5;10(10):3811-3819.

Compton A, Sharakhov IV, Tu Z. Recent advances and future perspectives in vector-omics. Curr Opin Insect Sci. 2020 Aug;40:94-103.

Jensen S, Brasset E, Parey E, Roest Crollius H, Sharakhov IV, Vaury C. Conserved Small Nucleotidic Elements at the Origin of Concerted piRNA Biogenesis from Genes and lncRNAs. Cells. 2020 Jun 18;9(6):1491.

MA Islam^VS, MM Khatun^VS, N Sriranganathan, SM Boyle. 2021. Essential Gene (s) Targeted by Peptide Nucleic Acids Kills Mycobacterium smegmatis in Culture and in Infected Macrophages. Advances in Infectious Diseases 11 (2), 156-164.

SG Waldrop^G, GP Smith^G, SM Boyle, N Sriranganathan. 2021. Brucella abortus RB51 ΔleuB expressing Salmonella FliC conjugated gonadotropins reduces mouse fetal numbers: A possible feral swine brucellosis immunocontraceptive vaccine. Heliyon 7 (2), e06149.

GG Schurig, SM Boyle, HA Qublan^G, N Sriranganathan. 2021. In search of a combined brucellosis and tuberculosis vaccine for cattle. Austral journal of veterinary sciences 53 (1), 1-8.

Farrow JM 3rd, Pesci EC, Slade DJ. Genome Sequences for Two Acinetobacter baumannii Strains Obtained Using the Unicycler Hybrid Assembly Pipeline. Microbiol Resour Announc. 2021 Mar 11;10(10):e00017-21.

Slade DJ. New Roles for Fusobacterium nucleatum in Cancer: Target the Bacteria, Host, or Both? Trends Cancer. 2021 Mar;7(3):185-187.

Udayasuryan B, Nguyen TTD^G, Slade DJ, Verbridge SS. Harnessing Tissue Engineering Tools to Interrogate Host-Microbiota Crosstalk in Cancer. iScience. 2020 Nov 30;23(12):101878.

Casasanta MA^G, Yoo CC^G, Udayasuryan B, Sanders BE^G, Umaña A^G, Zhang Y, Peng H, Duncan AJ^P, Wang Y^U, Li L, Verbridge SS, Slade DJ. Fusobacterium nucleatum host-cell binding and invasion induces IL-8 and CXCL1 secretion that drives colorectal cancer cell migration. Sci Signal. 2020 Jul 21;13(641):eaba9157. Cover Article

Hofmann M., Martin Del Campo^P, J.S., Sobrado, P, Tischler D. (2020) Biosynthesis of desferrioxamine siderophores initiated by decarboxylases: A functional investigation of two lysine/ornithine-decarboxylases from Gordonia rubripertincta CWB2 and Pimelobacter simplex 3E. Arch. Biochem. Biophys. 689:108429

Valentino^G H., Campbell, A.C., Schuermann, J.P., Sultana, N, Nam H.G., LeBlanc^U, S, Tanner, J.J., Sobrado P. (2020) Structure and Function of a Flavin-Dependent S-monooxygenase From Garlic (Allium sativum). J. Biol. Chem. 295:13239-13249. doi: 10.1074/jbc.RA120.014484

Campbell A.C., Stiers K.M., Martin Del Campo, J.S., Mehra-Chaudhary, R., Sobrado P., Tanner J.J. (2020) Trapping conformational states of a flavin-dependent N-monooxygenase in crystallo reveals protein and flavin dynamics. J. Biol. Chem. 295:13239-13249. doi: 10.1074/jbc.RA120.014750

Campbell, A.C., Robinson^G, R., Mena-Aguilar^G, D., Sobrado, P., Tanner, J.J. (2020) Structural determinants of flavin dynamics in a class B monooxygenase. Biochemistry. 59:4609-4616. doi: 10.1021/acs.biochem.0c00783

Li^P, H., Forson^G, B., Eckshtain-Lev^Pi, M., Valentino^G, H., Martin Del Campo^P, J., Tanner, J.J., Sobrado, P. Biochemical Characterization of the Two-Component Flavin-Dependent Monooxygenase involved in Valanimycin Biosynthesis. Biochemistry, In press, 2020. doi: 10.1021/acs.biochem.0c00679

Sobrado, P. (2021) Role of reduced flavin in dehalogenation reactions. Arch. Biochem. Biophys. In press. doi: 10.1016/j.abb.2020.108696

Dye, K.J., Vogelaar^P, N.J., Sobrado, P., Yang, Z. (2021) High-throughput screen for inhibitors of the Type IV Pilus Assembly ATPase PiB. 6: e00129-2. doi: 10.1128/mSphere.00129-21

Reis^P, R., Li, H., Johnson^U, M., Sobrado, P. Frontier in flavin-dependent monooxygenases. Arch. Biochem. Biophys. In press

Valentino^G, H., Korasick, A.D., Bohac, T.J., Shapiro, J.A., Wencewicz, A.T., Tanner, J.J., and Sobrado, P. (2021) ACS Omega, In press

Valentino^G, H., and Sobrado, P. (2021) Characterization of nitro-forming enzyme involved in fosfazinomycin biosynthesis. Arch. Biochem. Biophys. In press

Whitehurst, D., B. Friedman, K. Kochersberger, V. Sridhar, J. Weeks (2021). Drone-based community assessment, planning, and disaster risk management for sustainable development, Remote Sensing, 13, 1739. doi: 10.3390/rs13091739.

Kang^P, H., V. Sridhar, M. Mainuddin, L.D. Trung (2021). Impact of climate change on the drought and rice productivity of the Lower Mekong Basin, Nature Scientific Reports, 11:9383, doi: 10.1038/s41598-021-88405-2.

Satish Kumar, K., P AnandRaj, K. Sreelatha, V. Sridhar (2021). Regional analysis of drought severity-duration-frequency and severity-area-frequency patterns in the Godavari River Basin, India, International Journal of Climatology, doi: 10.1002/joc.7137.

Satish Kumar, K., P AnandRaj, K. Sreelatha, D.S. Bisht, V. Sridhar (2021). Monthly and seasonal drought characterization using GRACE-based groundwater drought index and its link to teleconnections across South Indian river basins, Climate 2021, 9, 56, doi: 0.3390/cli9040056.

Ramani, E.S., V. Sridhar. 2021. Landslide susceptibility analysis in the era of climate change: A logistic regression model case study in Coonoor, India, Hydrology, 8(1), 41, doi: 10.3390/hydrology8010041.

Hines^G IS, Ferguson^G CS, Bushman^U TJ, Gatlin III DM, Jensen RV, Smith SA, Kuhn DD, Stevens AM. 2020. Impact of a yeast-based dietary supplement on the intestinal microbiome of rainbow trout, Oncorhynchus mykiss. Aquaculture Research. doi:10.1111/are.15011

Farzad^G R, Kuhn DD, Smith SA, O’Keefe SF, Hines^G IS, Bushman^U TJ, Galagarza^G OA, Stevens AM. 2021. Effects of selenium-enriched prebiotic on the growth performance, innate immune response, oxidative enzyme activity and microbiome of rainbow trout (Oncorhynchus mykiss). Aquaculture 531:735980. Doi.org/10.1016/j.aquaculture.2020.735980

Ghaffarzadegan, N., L. M. Childs, and U. C. Täuber. 2020.Diverse computer simulation models provide unified lessons on university operation during a pandemic. BioScience, Viewpoint biaa122 [https://doi:10.1093/biosci/biaa122]. Note: This opinion piece and its underlying research were featured on WVTF Radio: Large Covid Outbreaks “Very Likely” On College Campuses, Unless... (26 Ocober 2020);

shortened version broadcast on National Public Radio (31 October 2020).

Deng^G, S., W. Li, and U. C. Täuber. 2020.Coupled two-species model for the pair contact process with diffusion.Physical Review E 102: 042126 – 1-18. [https://doi:10.1103/PhysRevE.102.042126]

Mukhamadiarov^G, R. I., Priyanka^P, and U. C. Täuber. 2020. Parallel temperature interfaces in the Katz-Lebowitz-Spohn driven lattice gas. Journal of Statistical Mechanics – Theory and Experiment (JSTAT) 2020: 113207– 1-20. [https://doi:10.1088/1742-5468/abc7b9]

Nandi^G, R. and U. C. Täuber. 2020. Critical dynamics of anisotropic antiferromagnets in an external field. Physical Review E 102: 052114 – 1-8. [https://doi:10.1103/PhysRevE.102.052114].

Mukhamadiarov^G, R. I., S. Deng^G, S. R. Serrao^G, Priyanka^P, R. Nandi^G, L. H. Yao^G, and Uwe C. Täuber. 2021. Social distancing and epidemic resurgence in agent-based Susceptible-Infectious-Recovered models, Scientific Reports 11: 130 – 1-8. [https://doi.org/10.1038/s41598-020-80162-y].

Priyanka^P, U. C. Täuber, and M. Pleimling. 2021.The role of the non-linearity in controlling the surface roughness for the one-dimensional Kardar-Parisi-Zhang growth process. Journal of Physics A: Mathematical and Theoretical 54: 154002 – 1-18. [https://doi.org/10.1088/1751-8121/abe753] Please note: Dr. Priyanka only goes by a single name.

Chujia Chen^G, Austin Compton^G, Katerina Nikolouli, Aihua Wang, Azadeh Aryan, Atashi Sharma, Yumin Qi, Camden Delinger, Melanie Hempel, Antonios Augustinos, David W Severson, Kostas Bourtzis, Zhijian Tu. 2021. Marker-assisted mapping enables effective forward genetic analysis in the arboviral vector Aedes aegypti, a species with vast recombination deserts. bioRxiv, https://doi.org/10.1101/2021.04.29.442065

Anton Zamyatin, Pavel Avdeyev, Jiangtao Liang, Atashi Sharma, Chujia Chen^G, Varvara Lukyanchikova, Nikita Alexeev, Zhijian Tu, Max A Alekseyev, Igor V Sharakhov. 2021. Chromosome-level genome assemblies of the malaria vectors Anopheles coluzzii and Anopheles arabiensis. GigaScience, 10, giab017

Aryan, A., Anderson M., Biedler J.K., Qi, Y., Overcas J. M., Naumenko A., Sharakhova M.A., Mao C., Adelman Z.A. and Tu Z. 2020. Nix alone is sufficient to convert female Aedes aegypti into fertile males and myo-sex is needed for male flight. Proc Natl Acad Sci U S A. 117 (30), 17702-17709.

Compton, A^G., Sharakhov, IV and Tu, Z. 2020. Recent Advances and Future Perspectives in Vector-omics. Current Opinion in Insect Science.

BB Kojin, JK Biedler, Z Tu, ZN Adelman. 2020. Characterization of a female germline and early zygote promoter from the transcription factor bZip1 in the dengue mosquito Aedes aegypti. Parasites & vectors 13 (1), 1-11 The Aedes albopictus genome consortium. 2020. Improved reference genome of the arboviral vector Aedes albopictus. Genome Biology, 21, 215.

Majeed^G, H.J., M. Riquelme^P, B.C. Davis^G, S. Gupta^G, L. Angeles^G, D.S. Aga, E. Garner^P, A. Pruden, and P.J. Vikesland. 2021. Evaluation of metagenomic-enabled antibiotic resistance surveillance at a conventional wastewater treatment plant. Frontiers in Microbiology, 13 May 2021, (https://doi.org/10.3389/fmicb.2021.657954)

Lee, J., F. Ju, A. Maile-Moskowitz^G, K. Beck, A. Maccagnan, C.S. McArdell, M. Dal Molin, F. Fenicia, P.J. Vikesland, A. Pruden, C. Stamm, and Bürgmann, H. 2021. Unraveling the riverine antibiotic resistome: The downstream fate of anthropogenic inputs Water Research, Vol. 197, 117050. (https://doi.org/10.1016/j.watres.2021.117050)

Bhide^G, S.V., S.B. Grant, E.A. Parker^G; M.A. Rippy, A. Godrej, S. Kaushal, G. Prelewicz, N. Saji, S. Curtis, P.J. Vikesland, A. Maile-Moskowitz^G, M. Edwards, K. Lopez^G, T.A. Birkland, and T. Schenk. 2021. Addressing the Contribution of Indirect Potable Reuse to Inland Freshwater Salinization Nature Sustainability, (https://doi.org/10.1038/s41893-021-00713-7)

Morris, D.H., K.C. Yinda, A. Gamble, F.W. Rossine, Q. Huang^G, T. Bushmaker, R.J. Fischer, M.J. Matson, N. van Doremalen, P.J. Vikesland, L.C. Marr, V.J. Munster, and J.O. Lloyd-Smith. 2021. Mechanistic theory predicts the effects of temperature and humidity on inactivation of SARS-CoV-2 and other enveloped viruses. eLife, 2021;10:e65902 (https://dx.doi.org/10.7554/eLife.65902)

Garner^P, E., B.C. Davis^G, E. Milligan^G, M.F. Blair^G, I. Keenum^G, A. Maile-Moskowitz^G, J. Pan^G, M. Gnegy^G, K. Liguori^G, S. Gupta^G, A.J. Prussin, L.C. Marr, L.S. Heath, P.J. Vikesland, L. Zhang, and A. Pruden. 2021. Next generation sequencing approaches to evaluate water and wastewater quality. Water Research, Vol. 194, 116907, (https://doi.org/10.1016/j.watres.2021.116907).

Angeles, L.F., R.S. Singh, P.J. Vikesland, and D.S. Aga. 2021. Increased coverage and high confidence in suspect screening of emerging contaminants in global environmental samples. Journal of Hazardous Materials, Vol. 414, 125369, (https://dx.doi.org/10.1016/j.jhazmat.2021.125369).

Brown^G, C.L., I.M. Keenum^G, D. Dai^P, L. Zhang, P.J. Vikesland, and A. Pruden. 2021. Critical evaluation of short, long, and hybrid assembly for contextual analysis of antibiotic resistance genes in complex environmental metagenomes. Scientific Reports, Vol. 11, Article # 3753. (https://dx.doi.org/10.1038/s41598-021-83081-8).

Huang^G, Q., H. Wei^G, L. Marr, and P.J. Vikesland. 2021. Direct quantification of the effect of ammonium on aerosol droplet pH. Environmental Science and Technology, Vol. 55, pp. 778-787. (https://dx.doi.org/10.1021/acs.est.0c07394).

Davis^G, B., M. Riquelme^P, G. Ramirez-Toro, C. Bandaragoda, E. Garner^P, W.J. Rhoads^P, P.J. Vikesland, and A. Pruden. 2020. Demonstrating an integrated antibiotic resistance gene surveillance approach in Puerto Rican watersheds post-Hurricane Maria. Environmental Science and Technology, Vol 54, pp. 15108-15119. (https://dx.doi.org/10.1021/acs.est.0c05567).

Nam^G, W., Y. Zhao, J. Song^G, S. Tali, S. Kang^G, W. Zhu, H. Lezec, A. Agrawal, P.J. Vikesland, and W. Zhou. 2020. Plasmonic electronic Raman scattering as internal standard for spatial and temporal calibration in quantitative surface-enhanced Raman spectroscopy. J. Physical Chemistry Letters, Vol. 11, pp. 9543-9551. (https://dx.doi.org/10.1021/acs.jpclett.0c03056).

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Tian, L.^G, Mazloom, R.^G, Heath, L. S., and Vinatzer, B. A. 2021. LINflow: a computational pipeline that combines an alignment-free with an alignment-based method to accelerate generation of similarity matrices for prokaryotic genomes. PeerJ. 9:e10906.

Vasebi, Y.^G, Khakvar, R., Tian, L.^G, Moubarak, P., Valentini, F., Weisberg, A. J.^P, and Vinatzer, B. A. 2020. Phenotypic characterization and phylogenetic analysis of Pseudomonas syringae strains associated with canker disease on apricot in Iran within the context of the global genetic diversity of the P. syringae complex. Eur. J. Plant Pathol. 158:545–560.

Walker^G, M., K. Chandrasegaran^P, C. Vinauger, M. Robert, and L.M. Childs. 2021. Modeling the effects of Aedes aegypti's larval environment on adult body mass at emergence. bioRxiv.

Ajayi^G, O. M., D. F. Eilerts^G, S.T. Bailey^G, C. Vinauger, and J.B. Benoit. 2020. Do Mosquitoes Sleep? Trends in Parasitology 36 (11), 888-897.

Wynne^G, N. E., M.G. Lorenzo, and C. Vinauger. 2020. Mechanism and plasticity of vectors’ host-seeking behavior. Current opinion in insect science, 40, 1-5. Varkey J.*, Zhang J.* ^P, Kim J., George G., He, G.^G, Belov G., Langen R., and Wang X. 2020 An amphipathic alpha-helix domain from poliovirus 2C protein tubulates lipid vesicles. Viruses 12: 1466. *: Equal contribution. Doi:10.3390/v12121466

Zimbres F. M., Valenciano A. L., Merino E. F., Holderman N. R., Florentin A., He G.^G, Gawarecka K., Skorupinska-Tudek K., Fernandez-Maria M., Swiezewska E., Wang X., Muralidharan V., and Cassera M. B. * (2020). Metabolomics profiling reveals new aspects of dolichol biosynthesis in Plasmodium falciparum. Sci Rep. 10: 13264. Doi: 10.1038/s41598-020-70246-0

Callahan V, Hawks S, Crawford MA, Lehman CW, Morrison HA, Ivester HM, Akhrymuk I, Boghdeh N, Flor R, Finkielstein CV, Allen IC, Weger-Lucarelli J, Duggal N, Hughes MA, Kehn-Hall K. The Pro-Inflammatory Chemokines CXCL9, CXCL10 and CXCL11 Are Upregulated Following SARS-CoV-2 Infection in an AKT-Dependent Manner. Viruses. Multidisciplinary Digital Publishing Institute; 2021 Jun 3;13(6):1062.

Chuong C^G, DuChane CM, Webb EM^G, Rai P^G, Marano JM^G, Bernier CM, Merola JS, Weger-Lucarelli J. Noble Metal Organometallic Complexes Display Antiviral Activity against SARS-CoV-2. Viruses. Multidisciplinary Digital Publishing Institute; 2021 May 25;13(6):980.

Rezelj VV, Carrau L, Merwaiss F, Levi LI, Erazo D, Tran QD, Henrion-Lacritick A, Gausson V, Suzuki Y, Shengjuler D, Meyer B, Vallet T, Weger-Lucarelli J, Bernhauerová V, Titievsky A, Sharov V, Pietropaoli S, Diaz-Salinas MA, Legros V, Pardigon N, Barba-Spaeth G, Brodsky L, Saleh M-C, Vignuzzi M. Defective viral genomes as therapeutic interfering particles against flavivirus infection in mammalian and mosquito hosts. Nat Commun. Springer Science and Business Media LLC; 2021 Apr 16;12(1):2290. PMID: 33863888

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Levi LI, Rezelj VV, Henrion-Lacritick A, Erazo D, Boussier J, Vallet T, Bernhauerová V, Suzuki Y, Carrau L, Weger-Lucarelli J, Saleh M-C, Vignuzzi M. Defective viral genomes from chikungunya virus are broad-spectrum antivirals and prevent virus dissemination in mosquitoes. PLoS Pathog. 2021 Feb;17(2):e1009110. PMCID: PMC7870000

Liu JL, Webb EM^G, Zabetakis D, Burke CW, Gardner CL, Glass PJ, Legler PM, Weger-Lucarelli J, Anderson GP, Goldman ER. Stabilization of a Broadly Neutralizing Anti-Chikungunya Virus Single Domain Antibody. Front Med. 2021 Jan 28;8:626028. PMCID: PMC7876468

Riemersma KK, Jaeger AS, Crooks CM, Braun KM, Weger-Lucarelli J, Ebel GD, Friedrich TC, Aliota MT. Rapid evolution of enhanced Zika virus virulence during direct vertebrate transmission chains. J Virol [Internet]. 2021 Feb 3; Available from: http://dx.doi.org/10.1128/JVI.02218-20 PMID: 33536175

Bates TA^G, Chuong C^G, Rai P^G, Marano J^G, Waldman A^U, Klinger A^U, Reinhold JM, Lahondère C, Weger-Lucarelli J. American Aedes japonicus japonicus, Culex pipiens pipiens, and Culex restuans mosquitoes have limited transmission capacity for a recent isolate of Usutu virus [Internet]. Virology. 2021. Available from: http://dx.doi.org/10.1016/j.virol.2020.12.023

Bates TA^G, Chuong C^G, Hawks SA, Rai P^G, Duggal NK, Weger-Lucarelli J. Development and characterization of infectious clones of two strains of Usutu virus. Virology. 2021 Feb;554:28–36. PMID: 33352463

Sexton NR, Bellis ED, Murrieta RA, Spangler MC, Cline PJ, Weger-Lucarelli J, Ebel GD. Genome number and size polymorphism in Zika virus infectious units. J Virol [Internet]. 2020 Dec 16; Available from: http://dx.doi.org/10.1128/JVI.00787-20 PMID: 33328311

Boussier J, Levi L, Weger-Lucarelli J, Poirier EZ, Vignuzzi M, Albert ML. Chikungunya virus superinfection exclusion is mediated by a block in viral replication and does not rely on non-structural protein 2. PLoS One. 2020 Nov 12;15(11):e0241592. PMCID: PMC7660575

Marano JM^G, Chuong C^G, Weger-Lucarelli J. Rolling circle amplification: A high fidelity and efficient alternative to plasmid preparation for the rescue of infectious clones. Virology. 2020 Dec;551:58–63. PMCID: PMC7521378

Rice, S., E. Fryer, S. G. Jha, A. Malkovskiy, H. Meyer, J. Thomas, R. Weizbauer, K. Zhao, K. Birnbaum, D. Erhardt, Z. Wang, S.Y. Rhee and The Plant Cell Atlas Consortium., (2020) First plant cell atlas workshop report. Plant Direct 4: e00271. https://doi.org/10.1002/pld3.271. Wright, C. My role: Drafted and revised the manuscript, consortium author as a member of The Plant Cell Atlas Consortium.

Parry, G., N.J. Provart, S.M. Brady, B. Uzilday and The Multinational Arabidopsis Steering Committee. (2020) Current Status of the Multinational Arabidopsis Community. Plant Direct, 4 (7), e00248. https://doi.org/10.1002/pld3.248 Wright, C. My role: Drafted and revised the manuscript, consortium author as a member of The Multinational Arabidopsis Steering Committee.

Keane J. Dye^G, Nancy J. Vogelaar, Pablo Sobrado, and Zhaomin Yang, 2021. High-Throughput Screen for Inhibitors of the Type IV Pilus Assembly ATPase PilB. Msphere 6 (2), e00129-21

Hensley C^G, Zhou P, Schnur S, Mahsoub HM^P, Liang Y^P, Wang MX, Page C, Yuan L*, Bronshtein V*. 2021. Thermostable, dissolvable buccal film rotavirus vaccine is highly effective in neonatal gnotobiotic pig challenge model. Vaccines (Basel) 2021, 9, doi:10.3390/vaccines9050437. (*indicate corresponding author).

Ramesh A^G, Parreño V, Schmidt PJ, Lei S^G, Zhong W, Jiang X, Emelko MB, Yuan L*. 2020. Evaluation of the 50% infectious dose of human norovirus Cin-2 in gnotobiotic pigs: A comparison of classical and contemporary methods for endpoint estimation. Viruses 12, 055. doi.org/10.3390/v12090955.

Fix J, Chandrashekhar K, Perez J, Bucardo F, Hudgens MG, Yuan L, Twitchell E^G, Azcarate-Peril MA, Vilchez S, Becker-Dreps S. 2020. Association between Gut Microbiome Composition and Rotavirus Vaccine Response among Nicaraguan Infants. Am J Trop Med Hyg 102, 213-219.

Hu, Y.^P, Zhao, Z.^G, Ehrich, M., Zhang, C. 2021. Formulation of nanovaccines toward an extended immunity against nicotine. ACS Applied Materials & Interfaces. In Press.

Hu, Y.^P, Smith, D.^U, Frazier, E.^U, Zhao, Z.^G, Zhang, C. 2021. Toll-like receptor 9 agonists as adjuvants for nanoparticle-based nicotine vaccine. Molecular Pharmaceutics. 18(3):1293-1304. PMID: 33497574.

Wu^p, T., Zou, R., Pu, D., Lan, Z., & Zhao, B. (2021). Non-targeted and targeted metabolomics profiling of tea plants (Camellia sinensis) in response to its intercropping with Chinese chestnut. BMC plant biology, 21(1), 55. https://doi.org/10.1186/s12870-021-02841-w

Yi Liu^p, Kunru Wang^g, Qiang Cheng^p, Danyu Kong^p, Xunzhong Zhang, Zhibo Wang^g, Qian Wang, Xie Qi, Jijun Yan, Jinfang Chu, Hongqing Ling, Qi Li^g, Jiamin Miao^g, Bingyu Zhao (2020). Cysteine protease RD21A regulated by E3 ligase SINAT4 is required for drought-induced resistance to Pseudomonas syringae in Arabidopsis, Journal of Experimental Botany, doi: eraa255.

Xia, X., X. Fu^G, B. Wu, X. Zhao, J. Zhu, and Z. Zhao. 2020. Regulation of circadian rhythm and sleep by miR-375-timeless interaction in Drosophila. FASEB Journal. 34(12):16536-16551.

Ahmed^G, T.H., T.R. Saunders, D. Mullins, M.Z. Rahman, and J. Zhu. 2020. Molecular action of pyriproxyfen: Role of the Methoprene-tolerant protein in the pyriproxyfen-induced sterilization of adult female mosquitoes. PLOS Neglected Tropical Diseases. 14(8):e0008669.

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